Experiment: Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_5050 and PP_5051 are separated by 517 nucleotides PP_5051 and PP_5052 overlap by 14 nucleotides PP_5052 and PP_5053 are separated by 155 nucleotides PP_5053 and PP_5054 are separated by 39 nucleotides PP_5054 and PP_5055 are separated by 1 nucleotides
PP_5050: PP_5050 - transposase, at 5,757,011 to 5,757,976
_5050
PP_5051: PP_5051 - conserved protein of unknown function, at 5,758,494 to 5,758,931
_5051
PP_5052: PP_5052 - tRNA(Leu) mC34,mU34 2'-O-ribose methyltransferase, AdoMet-dependent, at 5,758,918 to 5,759,391
_5052
PP_5053: PP_5053 - Protein-export protein SecB, at 5,759,547 to 5,760,032
_5053
PP_5054: PP_5054 - glutaredoxin 3, at 5,760,072 to 5,760,326
_5054
PP_5055: PP_5055 - Sulfurtransferase, at 5,760,328 to 5,760,741
_5055
Position (kb) 5758
5759
5760 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5758.093 kb on + strand at 5758.116 kb on + strand at 5758.318 kb on - strand at 5758.324 kb on + strand at 5758.325 kb on - strand at 5758.325 kb on - strand at 5758.325 kb on - strand at 5758.351 kb on - strand at 5758.379 kb on - strand at 5758.411 kb on + strand at 5758.411 kb on + strand at 5758.411 kb on + strand at 5758.438 kb on - strand at 5758.438 kb on - strand at 5758.438 kb on - strand at 5758.439 kb on + strand at 5758.440 kb on - strand at 5758.467 kb on + strand at 5758.468 kb on - strand at 5758.496 kb on - strand at 5758.612 kb on - strand, within PP_5051 at 5758.796 kb on + strand, within PP_5051 at 5758.821 kb on + strand, within PP_5051 at 5758.992 kb on - strand, within PP_5052 at 5759.089 kb on + strand, within PP_5052 at 5759.164 kb on - strand, within PP_5052 at 5759.335 kb on - strand, within PP_5052 at 5759.353 kb on + strand at 5759.354 kb on - strand at 5759.354 kb on - strand at 5759.354 kb on - strand at 5759.354 kb on - strand at 5759.354 kb on - strand at 5759.433 kb on + strand at 5759.477 kb on + strand at 5759.545 kb on - strand at 5759.549 kb on - strand at 5759.549 kb on - strand at 5759.558 kb on + strand at 5759.559 kb on - strand at 5759.559 kb on - strand at 5759.582 kb on + strand at 5759.602 kb on + strand, within PP_5053 at 5759.603 kb on - strand, within PP_5053 at 5759.766 kb on - strand, within PP_5053 at 5759.962 kb on + strand, within PP_5053 at 5759.962 kb on + strand, within PP_5053 at 5759.962 kb on + strand, within PP_5053 at 5759.962 kb on + strand at 5759.962 kb on + strand, within PP_5053 at 5759.962 kb on + strand, within PP_5053 at 5759.962 kb on + strand, within PP_5053 at 5759.962 kb on + strand, within PP_5053 at 5759.962 kb on + strand, within PP_5053 at 5759.962 kb on + strand, within PP_5053 at 5759.963 kb on - strand, within PP_5053 at 5759.963 kb on - strand, within PP_5053 at 5759.963 kb on - strand, within PP_5053 at 5759.963 kb on - strand, within PP_5053 at 5759.963 kb on - strand, within PP_5053 at 5759.963 kb on - strand, within PP_5053 at 5759.963 kb on - strand, within PP_5053 at 5760.043 kb on + strand at 5760.048 kb on + strand at 5760.048 kb on + strand at 5760.048 kb on + strand at 5760.118 kb on + strand, within PP_5054 at 5760.119 kb on - strand, within PP_5054 at 5760.119 kb on - strand, within PP_5054 at 5760.119 kb on - strand, within PP_5054 at 5760.269 kb on - strand, within PP_5054 at 5760.296 kb on - strand, within PP_5054 at 5760.307 kb on + strand at 5760.326 kb on + strand at 5760.326 kb on + strand at 5760.326 kb on + strand at 5760.327 kb on - strand at 5760.327 kb on - strand at 5760.327 kb on - strand at 5760.327 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs remove 5,758,093 + -0.9 5,758,116 + -0.0 5,758,318 - +0.4 5,758,324 + -0.5 5,758,325 - +0.5 5,758,325 - -1.0 5,758,325 - -0.7 5,758,351 - -0.7 5,758,379 - +0.8 5,758,411 + +1.2 5,758,411 + -0.4 5,758,411 + +0.0 5,758,438 - -1.3 5,758,438 - -0.1 5,758,438 - -0.0 5,758,439 + -2.4 5,758,440 - +1.0 5,758,467 + -0.7 5,758,468 - -0.3 5,758,496 - +0.4 5,758,612 - PP_5051 0.27 -0.9 5,758,796 + PP_5051 0.69 -0.0 5,758,821 + PP_5051 0.75 -0.8 5,758,992 - PP_5052 0.16 +0.5 5,759,089 + PP_5052 0.36 +0.0 5,759,164 - PP_5052 0.52 +1.1 5,759,335 - PP_5052 0.88 +0.6 5,759,353 + +0.0 5,759,354 - +0.6 5,759,354 - +0.2 5,759,354 - -0.0 5,759,354 - +0.8 5,759,354 - +0.8 5,759,433 + -2.2 5,759,477 + +1.8 5,759,545 - -1.1 5,759,549 - +0.5 5,759,549 - -0.5 5,759,558 + -0.4 5,759,559 - -0.8 5,759,559 - +0.5 5,759,582 + -0.1 5,759,602 + PP_5053 0.11 -0.4 5,759,603 - PP_5053 0.12 -0.4 5,759,766 - PP_5053 0.45 +1.6 5,759,962 + PP_5053 0.85 +0.0 5,759,962 + PP_5053 0.85 -1.7 5,759,962 + PP_5053 0.85 -0.2 5,759,962 + +2.7 5,759,962 + PP_5053 0.85 +0.4 5,759,962 + PP_5053 0.85 +0.9 5,759,962 + PP_5053 0.85 +0.3 5,759,962 + PP_5053 0.85 -0.1 5,759,962 + PP_5053 0.85 +0.5 5,759,962 + PP_5053 0.85 +0.1 5,759,963 - PP_5053 0.86 -1.0 5,759,963 - PP_5053 0.86 +1.2 5,759,963 - PP_5053 0.86 +0.8 5,759,963 - PP_5053 0.86 +0.4 5,759,963 - PP_5053 0.86 -0.6 5,759,963 - PP_5053 0.86 +1.6 5,759,963 - PP_5053 0.86 +0.2 5,760,043 + -1.9 5,760,048 + -2.0 5,760,048 + +1.0 5,760,048 + -1.1 5,760,118 + PP_5054 0.18 -0.3 5,760,119 - PP_5054 0.18 +0.1 5,760,119 - PP_5054 0.18 -1.0 5,760,119 - PP_5054 0.18 -0.9 5,760,269 - PP_5054 0.77 -0.2 5,760,296 - PP_5054 0.88 +0.6 5,760,307 + -0.0 5,760,326 + +1.3 5,760,326 + +1.7 5,760,326 + +0.3 5,760,327 - -1.4 5,760,327 - -0.2 5,760,327 - +1.4 5,760,327 - -0.8
Or see this region's nucleotide sequence