Experiment: Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_5021 and PP_5022 are separated by 109 nucleotides PP_5022 and PP_5023 overlap by 8 nucleotides
PP_5021: PP_5021 - Methyl-accepting chemotaxis transducer, at 5,719,476 to 5,721,419
_5021
PP_5022: PP_5022 - Glutamine transport ATP-binding protein GlnQ, at 5,721,529 to 5,722,263
_5022
PP_5023: PP_5023 - Amino acid ABC transporter, permease protein, at 5,722,256 to 5,723,218
_5023
Position (kb) 5721
5722
5723 Strain fitness (log2 ratio) -2
-1
0
1 at 5720.809 kb on + strand, within PP_5021 at 5720.809 kb on + strand, within PP_5021 at 5720.810 kb on - strand, within PP_5021 at 5720.810 kb on - strand at 5721.461 kb on + strand at 5721.461 kb on + strand at 5721.461 kb on + strand at 5721.461 kb on + strand at 5721.462 kb on - strand at 5721.462 kb on - strand at 5721.462 kb on - strand at 5721.530 kb on + strand at 5721.876 kb on + strand, within PP_5022 at 5721.877 kb on - strand, within PP_5022 at 5722.326 kb on + strand at 5722.326 kb on + strand at 5722.327 kb on - strand at 5722.327 kb on - strand at 5722.327 kb on - strand at 5722.361 kb on - strand, within PP_5023 at 5722.379 kb on - strand, within PP_5023 at 5722.379 kb on - strand, within PP_5023 at 5722.608 kb on + strand, within PP_5023 at 5722.609 kb on - strand, within PP_5023 at 5722.609 kb on - strand, within PP_5023 at 5722.609 kb on - strand, within PP_5023 at 5722.609 kb on - strand, within PP_5023 at 5722.609 kb on - strand, within PP_5023 at 5722.686 kb on + strand, within PP_5023 at 5722.686 kb on + strand, within PP_5023 at 5722.687 kb on - strand, within PP_5023 at 5722.687 kb on - strand, within PP_5023 at 5722.687 kb on - strand, within PP_5023 at 5722.738 kb on - strand, within PP_5023 at 5723.043 kb on + strand, within PP_5023 at 5723.077 kb on - strand, within PP_5023 at 5723.115 kb on + strand, within PP_5023 at 5723.139 kb on + strand at 5723.139 kb on + strand at 5723.139 kb on + strand at 5723.139 kb on + strand at 5723.139 kb on + strand at 5723.139 kb on + strand at 5723.140 kb on - strand at 5723.140 kb on - strand at 5723.140 kb on - strand at 5723.225 kb on + strand at 5723.233 kb on + strand at 5723.234 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs remove 5,720,809 + PP_5021 0.69 -1.2 5,720,809 + PP_5021 0.69 +0.9 5,720,810 - PP_5021 0.69 +0.6 5,720,810 - +0.6 5,721,461 + -0.6 5,721,461 + +0.2 5,721,461 + -0.8 5,721,461 + +0.8 5,721,462 - +0.7 5,721,462 - -0.9 5,721,462 - -0.6 5,721,530 + +1.2 5,721,876 + PP_5022 0.47 +0.7 5,721,877 - PP_5022 0.47 +0.5 5,722,326 + +0.5 5,722,326 + -1.2 5,722,327 - +1.2 5,722,327 - -0.2 5,722,327 - +1.2 5,722,361 - PP_5023 0.11 -0.1 5,722,379 - PP_5023 0.13 -2.0 5,722,379 - PP_5023 0.13 -0.1 5,722,608 + PP_5023 0.37 -1.0 5,722,609 - PP_5023 0.37 -0.4 5,722,609 - PP_5023 0.37 -0.9 5,722,609 - PP_5023 0.37 -1.3 5,722,609 - PP_5023 0.37 -0.0 5,722,609 - PP_5023 0.37 +0.2 5,722,686 + PP_5023 0.45 +0.3 5,722,686 + PP_5023 0.45 +0.2 5,722,687 - PP_5023 0.45 -1.1 5,722,687 - PP_5023 0.45 -1.1 5,722,687 - PP_5023 0.45 -1.6 5,722,738 - PP_5023 0.50 +1.6 5,723,043 + PP_5023 0.82 +0.8 5,723,077 - PP_5023 0.85 +0.5 5,723,115 + PP_5023 0.89 -1.6 5,723,139 + +1.1 5,723,139 + +0.9 5,723,139 + +0.3 5,723,139 + +0.6 5,723,139 + +1.4 5,723,139 + +0.8 5,723,140 - -0.4 5,723,140 - -1.6 5,723,140 - +0.9 5,723,225 + +0.2 5,723,233 + -0.6 5,723,234 - +0.2
Or see this region's nucleotide sequence