Experiment: Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_4517 and PP_4518 are separated by 7 nucleotides PP_4518 and PP_4519 are separated by 311 nucleotides PP_4519 and PP_4520 are separated by 62 nucleotides PP_4520 and PP_4521 are separated by 64 nucleotides
PP_4517: PP_4517 - conserved protein of unknown function, at 5,131,647 to 5,132,234
_4517
PP_4518: PP_4518 - conserved protein of unknown function, at 5,132,242 to 5,132,607
_4518
PP_4519: PP_4519 - Agglutination protein, at 5,132,919 to 5,134,277
_4519
PP_4520: PP_4520 - conserved protein of unknown function, at 5,134,340 to 5,134,939
_4520
PP_4521: PP_4521 - putative aerotaxis receptor, at 5,135,004 to 5,136,569
_4521
Position (kb) 5132
5133
5134
5135 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5132.300 kb on + strand, within PP_4518 at 5132.425 kb on + strand, within PP_4518 at 5132.425 kb on + strand, within PP_4518 at 5132.464 kb on + strand, within PP_4518 at 5132.465 kb on - strand, within PP_4518 at 5132.569 kb on + strand, within PP_4518 at 5132.569 kb on + strand, within PP_4518 at 5132.569 kb on + strand, within PP_4518 at 5132.570 kb on - strand, within PP_4518 at 5132.570 kb on - strand, within PP_4518 at 5132.570 kb on - strand, within PP_4518 at 5132.570 kb on - strand, within PP_4518 at 5132.570 kb on - strand, within PP_4518 at 5132.570 kb on - strand at 5132.683 kb on - strand at 5132.683 kb on - strand at 5132.691 kb on + strand at 5132.692 kb on - strand at 5132.692 kb on - strand at 5132.748 kb on + strand at 5132.749 kb on - strand at 5132.765 kb on - strand at 5132.767 kb on + strand at 5132.768 kb on - strand at 5132.788 kb on + strand at 5132.820 kb on + strand at 5132.820 kb on + strand at 5132.820 kb on + strand at 5132.820 kb on + strand at 5132.820 kb on + strand at 5132.821 kb on - strand at 5132.821 kb on - strand at 5132.821 kb on - strand at 5132.821 kb on - strand at 5132.848 kb on + strand at 5132.850 kb on + strand at 5132.850 kb on + strand at 5132.858 kb on - strand at 5132.915 kb on + strand at 5132.915 kb on + strand at 5132.915 kb on + strand at 5132.915 kb on + strand at 5132.915 kb on + strand at 5132.915 kb on + strand at 5132.915 kb on + strand at 5132.915 kb on + strand at 5132.916 kb on - strand at 5132.916 kb on - strand at 5132.950 kb on + strand at 5132.950 kb on + strand at 5132.951 kb on - strand at 5132.977 kb on + strand at 5132.977 kb on + strand at 5132.978 kb on - strand at 5132.978 kb on - strand at 5132.994 kb on - strand at 5133.022 kb on - strand at 5133.047 kb on + strand at 5133.048 kb on - strand at 5133.096 kb on + strand, within PP_4519 at 5133.097 kb on - strand, within PP_4519 at 5133.097 kb on - strand, within PP_4519 at 5133.097 kb on - strand, within PP_4519 at 5133.097 kb on - strand, within PP_4519 at 5133.097 kb on - strand, within PP_4519 at 5133.099 kb on + strand, within PP_4519 at 5133.099 kb on + strand, within PP_4519 at 5133.099 kb on + strand, within PP_4519 at 5133.100 kb on - strand, within PP_4519 at 5133.127 kb on - strand, within PP_4519 at 5133.155 kb on + strand, within PP_4519 at 5133.195 kb on + strand, within PP_4519 at 5133.196 kb on - strand, within PP_4519 at 5133.196 kb on - strand, within PP_4519 at 5133.196 kb on - strand, within PP_4519 at 5133.259 kb on + strand, within PP_4519 at 5133.282 kb on - strand, within PP_4519 at 5133.282 kb on - strand, within PP_4519 at 5133.295 kb on - strand, within PP_4519 at 5133.297 kb on + strand, within PP_4519 at 5133.297 kb on + strand, within PP_4519 at 5133.298 kb on - strand, within PP_4519 at 5133.298 kb on - strand, within PP_4519 at 5133.298 kb on - strand, within PP_4519 at 5133.666 kb on + strand, within PP_4519 at 5133.666 kb on + strand, within PP_4519 at 5133.666 kb on + strand, within PP_4519 at 5133.666 kb on + strand, within PP_4519 at 5133.667 kb on - strand, within PP_4519 at 5133.667 kb on - strand, within PP_4519 at 5133.711 kb on + strand, within PP_4519 at 5133.711 kb on + strand, within PP_4519 at 5133.712 kb on - strand, within PP_4519 at 5133.735 kb on + strand, within PP_4519 at 5133.735 kb on + strand, within PP_4519 at 5133.736 kb on - strand, within PP_4519 at 5133.736 kb on - strand, within PP_4519 at 5133.736 kb on - strand, within PP_4519 at 5133.837 kb on + strand, within PP_4519 at 5133.837 kb on + strand, within PP_4519 at 5133.837 kb on + strand, within PP_4519 at 5133.838 kb on - strand, within PP_4519 at 5133.838 kb on - strand, within PP_4519 at 5133.874 kb on + strand, within PP_4519 at 5133.875 kb on - strand, within PP_4519 at 5133.875 kb on - strand, within PP_4519 at 5133.875 kb on - strand, within PP_4519 at 5133.875 kb on - strand, within PP_4519 at 5134.009 kb on - strand, within PP_4519 at 5134.108 kb on - strand, within PP_4519 at 5134.205 kb on + strand at 5134.206 kb on - strand at 5134.206 kb on - strand at 5134.357 kb on + strand at 5134.357 kb on + strand at 5134.358 kb on - strand at 5134.358 kb on - strand at 5134.358 kb on - strand at 5134.373 kb on + strand at 5134.373 kb on + strand at 5134.374 kb on - strand at 5134.587 kb on + strand, within PP_4520 at 5134.588 kb on - strand, within PP_4520 at 5134.588 kb on - strand, within PP_4520 at 5134.588 kb on - strand, within PP_4520 at 5134.663 kb on - strand, within PP_4520 at 5134.663 kb on - strand, within PP_4520 at 5134.663 kb on - strand, within PP_4520 at 5134.663 kb on - strand, within PP_4520 at 5134.889 kb on + strand at 5134.890 kb on - strand at 5134.890 kb on - strand at 5135.031 kb on - strand at 5135.031 kb on - strand at 5135.038 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs remove 5,132,300 + PP_4518 0.16 +0.1 5,132,425 + PP_4518 0.50 +1.4 5,132,425 + PP_4518 0.50 -0.6 5,132,464 + PP_4518 0.61 -1.1 5,132,465 - PP_4518 0.61 -1.3 5,132,569 + PP_4518 0.89 -0.1 5,132,569 + PP_4518 0.89 +0.2 5,132,569 + PP_4518 0.89 -0.7 5,132,570 - PP_4518 0.90 -0.3 5,132,570 - PP_4518 0.90 -0.2 5,132,570 - PP_4518 0.90 -0.3 5,132,570 - PP_4518 0.90 -0.2 5,132,570 - PP_4518 0.90 +0.7 5,132,570 - -0.3 5,132,683 - -0.7 5,132,683 - -0.1 5,132,691 + -0.4 5,132,692 - +0.6 5,132,692 - +0.5 5,132,748 + +0.8 5,132,749 - -1.8 5,132,765 - -0.7 5,132,767 + +1.3 5,132,768 - +0.9 5,132,788 + -0.9 5,132,820 + -2.0 5,132,820 + -1.5 5,132,820 + -1.1 5,132,820 + +0.4 5,132,820 + -1.3 5,132,821 - +1.5 5,132,821 - +1.7 5,132,821 - +1.6 5,132,821 - +0.7 5,132,848 + -1.3 5,132,850 + +0.3 5,132,850 + +0.2 5,132,858 - +1.6 5,132,915 + +0.8 5,132,915 + +1.8 5,132,915 + +0.7 5,132,915 + +0.2 5,132,915 + +1.0 5,132,915 + +0.9 5,132,915 + +2.1 5,132,915 + +1.2 5,132,916 - +1.8 5,132,916 - +0.6 5,132,950 + +1.3 5,132,950 + +0.2 5,132,951 - +1.1 5,132,977 + +1.2 5,132,977 + +0.4 5,132,978 - +0.1 5,132,978 - -0.4 5,132,994 - +0.1 5,133,022 - +0.9 5,133,047 + +1.8 5,133,048 - +0.5 5,133,096 + PP_4519 0.13 -0.7 5,133,097 - PP_4519 0.13 +1.6 5,133,097 - PP_4519 0.13 +1.0 5,133,097 - PP_4519 0.13 +0.8 5,133,097 - PP_4519 0.13 +1.4 5,133,097 - PP_4519 0.13 +1.7 5,133,099 + PP_4519 0.13 +1.1 5,133,099 + PP_4519 0.13 +1.2 5,133,099 + PP_4519 0.13 +1.7 5,133,100 - PP_4519 0.13 +0.2 5,133,127 - PP_4519 0.15 +1.8 5,133,155 + PP_4519 0.17 +2.4 5,133,195 + PP_4519 0.20 +1.3 5,133,196 - PP_4519 0.20 +0.7 5,133,196 - PP_4519 0.20 +0.5 5,133,196 - PP_4519 0.20 +0.4 5,133,259 + PP_4519 0.25 -0.4 5,133,282 - PP_4519 0.27 +1.3 5,133,282 - PP_4519 0.27 +1.2 5,133,295 - PP_4519 0.28 +0.6 5,133,297 + PP_4519 0.28 +0.9 5,133,297 + PP_4519 0.28 +0.7 5,133,298 - PP_4519 0.28 +1.1 5,133,298 - PP_4519 0.28 +0.6 5,133,298 - PP_4519 0.28 +1.5 5,133,666 + PP_4519 0.55 +1.1 5,133,666 + PP_4519 0.55 +1.2 5,133,666 + PP_4519 0.55 +0.7 5,133,666 + PP_4519 0.55 +0.7 5,133,667 - PP_4519 0.55 +1.4 5,133,667 - PP_4519 0.55 +1.1 5,133,711 + PP_4519 0.58 +0.4 5,133,711 + PP_4519 0.58 +0.8 5,133,712 - PP_4519 0.58 -0.3 5,133,735 + PP_4519 0.60 -0.3 5,133,735 + PP_4519 0.60 +1.2 5,133,736 - PP_4519 0.60 +0.8 5,133,736 - PP_4519 0.60 +1.3 5,133,736 - PP_4519 0.60 +0.2 5,133,837 + PP_4519 0.68 +1.1 5,133,837 + PP_4519 0.68 +1.6 5,133,837 + PP_4519 0.68 +0.4 5,133,838 - PP_4519 0.68 +1.6 5,133,838 - PP_4519 0.68 +1.5 5,133,874 + PP_4519 0.70 +1.3 5,133,875 - PP_4519 0.70 +1.2 5,133,875 - PP_4519 0.70 +0.7 5,133,875 - PP_4519 0.70 +1.2 5,133,875 - PP_4519 0.70 +1.1 5,134,009 - PP_4519 0.80 +2.0 5,134,108 - PP_4519 0.87 +1.1 5,134,205 + +1.1 5,134,206 - +1.8 5,134,206 - +1.6 5,134,357 + +1.1 5,134,357 + -1.4 5,134,358 - -0.1 5,134,358 - -0.3 5,134,358 - -1.0 5,134,373 + -1.3 5,134,373 + -0.5 5,134,374 - -1.0 5,134,587 + PP_4520 0.41 -0.9 5,134,588 - PP_4520 0.41 -0.7 5,134,588 - PP_4520 0.41 -0.0 5,134,588 - PP_4520 0.41 -1.2 5,134,663 - PP_4520 0.54 -1.1 5,134,663 - PP_4520 0.54 +0.1 5,134,663 - PP_4520 0.54 -0.8 5,134,663 - PP_4520 0.54 +0.2 5,134,889 + +0.0 5,134,890 - +0.6 5,134,890 - -0.8 5,135,031 - -0.5 5,135,031 - +0.7 5,135,038 + -0.6
Or see this region's nucleotide sequence