Strain Fitness in Pseudomonas putida KT2440 around PP_0731

Experiment: Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0730 and PP_0731 are separated by 12 nucleotidesPP_0731 and PP_0732 are separated by 804 nucleotides PP_0730: PP_0730 - conserved protein of unknown function, at 847,259 to 848,569 _0730 PP_0731: PP_0731 - phosphatidylcholine synthase, at 848,582 to 850,417 _0731 PP_0732: PP_0732 - Glutamyl-tRNA reductase, at 851,222 to 852,499 _0732 Position (kb) 848 849 850 851Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 847.607 kb on + strand, within PP_0730at 847.644 kb on + strand, within PP_0730at 847.658 kb on + strand, within PP_0730at 847.691 kb on + strand, within PP_0730at 847.691 kb on + strand, within PP_0730at 847.731 kb on + strand, within PP_0730at 847.732 kb on - strand, within PP_0730at 847.732 kb on - strand, within PP_0730at 847.776 kb on + strand, within PP_0730at 847.776 kb on + strand, within PP_0730at 847.776 kb on + strand, within PP_0730at 847.776 kb on + strand, within PP_0730at 847.777 kb on - strand, within PP_0730at 847.777 kb on - strand, within PP_0730at 847.777 kb on - strand, within PP_0730at 847.777 kb on - strand, within PP_0730at 847.838 kb on + strand, within PP_0730at 847.839 kb on - strand, within PP_0730at 847.849 kb on + strand, within PP_0730at 847.931 kb on - strand, within PP_0730at 847.941 kb on + strand, within PP_0730at 847.941 kb on + strand, within PP_0730at 847.941 kb on + strand, within PP_0730at 847.941 kb on + strand, within PP_0730at 847.942 kb on - strand, within PP_0730at 847.942 kb on - strand, within PP_0730at 847.942 kb on - strand, within PP_0730at 847.942 kb on - strand, within PP_0730at 847.956 kb on + strand, within PP_0730at 847.984 kb on + strand, within PP_0730at 847.984 kb on + strand, within PP_0730at 847.985 kb on - strand, within PP_0730at 847.985 kb on - strand, within PP_0730at 847.985 kb on - strand, within PP_0730at 847.985 kb on - strand, within PP_0730at 848.054 kb on + strand, within PP_0730at 848.054 kb on + strand, within PP_0730at 848.054 kb on + strand, within PP_0730at 848.150 kb on + strand, within PP_0730at 848.150 kb on + strand, within PP_0730at 848.150 kb on + strand, within PP_0730at 848.151 kb on - strand, within PP_0730at 848.151 kb on - strand, within PP_0730at 848.151 kb on - strand, within PP_0730at 848.153 kb on + strand, within PP_0730at 848.153 kb on + strand, within PP_0730at 848.153 kb on + strand, within PP_0730at 848.154 kb on - strand, within PP_0730at 848.154 kb on - strand, within PP_0730at 848.174 kb on + strand, within PP_0730at 848.175 kb on - strand, within PP_0730at 848.214 kb on + strand, within PP_0730at 848.214 kb on + strand, within PP_0730at 848.215 kb on - strand, within PP_0730at 848.215 kb on - strand, within PP_0730at 848.215 kb on - strand, within PP_0730at 848.215 kb on - strand, within PP_0730at 848.215 kb on - strand, within PP_0730at 848.215 kb on - strand, within PP_0730at 848.217 kb on - strand, within PP_0730at 848.239 kb on - strand, within PP_0730at 848.285 kb on + strand, within PP_0730at 848.286 kb on - strand, within PP_0730at 848.288 kb on + strand, within PP_0730at 848.288 kb on + strand, within PP_0730at 848.288 kb on + strand, within PP_0730at 848.288 kb on + strand, within PP_0730at 848.288 kb on + strand, within PP_0730at 848.288 kb on + strand, within PP_0730at 848.289 kb on - strand, within PP_0730at 848.306 kb on - strand, within PP_0730at 848.394 kb on + strand, within PP_0730at 848.394 kb on + strand, within PP_0730at 848.394 kb on + strand, within PP_0730at 848.395 kb on - strand, within PP_0730at 848.395 kb on - strand, within PP_0730at 848.395 kb on - strand, within PP_0730at 848.395 kb on - strand, within PP_0730at 848.406 kb on + strand, within PP_0730at 848.406 kb on + strand, within PP_0730at 848.406 kb on + strand, within PP_0730at 848.407 kb on - strand, within PP_0730at 848.415 kb on + strand, within PP_0730at 848.415 kb on + strand, within PP_0730at 848.415 kb on + strand, within PP_0730at 848.415 kb on + strand, within PP_0730at 848.416 kb on - strand, within PP_0730at 848.537 kb on + strandat 848.538 kb on - strandat 848.583 kb on + strandat 848.598 kb on + strandat 848.603 kb on - strandat 848.603 kb on - strandat 848.655 kb on + strandat 848.656 kb on - strandat 848.656 kb on - strandat 848.781 kb on + strand, within PP_0731at 848.781 kb on + strand, within PP_0731at 848.781 kb on + strand, within PP_0731at 848.782 kb on - strand, within PP_0731at 848.782 kb on - strand, within PP_0731at 848.874 kb on - strand, within PP_0731at 848.913 kb on - strand, within PP_0731at 848.913 kb on - strand, within PP_0731at 848.967 kb on - strand, within PP_0731at 848.967 kb on - strand, within PP_0731at 849.009 kb on + strand, within PP_0731at 849.140 kb on + strand, within PP_0731at 849.143 kb on + strand, within PP_0731at 849.224 kb on + strand, within PP_0731at 849.302 kb on - strand, within PP_0731at 849.302 kb on - strand, within PP_0731at 849.328 kb on - strand, within PP_0731at 849.328 kb on - strand, within PP_0731at 849.371 kb on + strand, within PP_0731at 849.571 kb on + strand, within PP_0731at 849.572 kb on - strand, within PP_0731at 849.575 kb on + strand, within PP_0731at 849.576 kb on - strand, within PP_0731at 849.589 kb on + strand, within PP_0731at 849.589 kb on + strand, within PP_0731at 849.589 kb on + strand, within PP_0731at 849.590 kb on - strand, within PP_0731at 849.641 kb on - strand, within PP_0731at 849.666 kb on + strand, within PP_0731at 849.667 kb on - strand, within PP_0731at 849.667 kb on - strand, within PP_0731at 849.667 kb on - strand, within PP_0731at 849.760 kb on - strand, within PP_0731at 849.760 kb on - strand, within PP_0731at 849.783 kb on + strand, within PP_0731at 849.866 kb on + strand, within PP_0731at 849.866 kb on + strand, within PP_0731at 849.866 kb on + strand, within PP_0731at 849.866 kb on + strand, within PP_0731at 849.867 kb on - strand, within PP_0731at 849.871 kb on - strand, within PP_0731at 849.871 kb on - strand, within PP_0731at 849.871 kb on - strand, within PP_0731at 849.950 kb on + strand, within PP_0731at 850.038 kb on + strand, within PP_0731at 850.058 kb on - strand, within PP_0731at 850.058 kb on - strand, within PP_0731at 850.106 kb on + strand, within PP_0731at 850.205 kb on + strand, within PP_0731at 850.205 kb on + strand, within PP_0731at 850.205 kb on + strand, within PP_0731at 850.206 kb on - strand, within PP_0731at 850.206 kb on - strand, within PP_0731at 850.209 kb on + strand, within PP_0731at 850.294 kb on + strandat 850.433 kb on + strandat 850.434 kb on - strandat 850.740 kb on + strandat 850.741 kb on - strandat 850.741 kb on - strandat 850.741 kb on - strandat 850.926 kb on + strandat 851.103 kb on - strandat 851.112 kb on + strandat 851.113 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs
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847,607 + PP_0730 0.27 +1.4
847,644 + PP_0730 0.29 +0.8
847,658 + PP_0730 0.30 -1.6
847,691 + PP_0730 0.33 -0.6
847,691 + PP_0730 0.33 +0.7
847,731 + PP_0730 0.36 +1.8
847,732 - PP_0730 0.36 +1.4
847,732 - PP_0730 0.36 +0.1
847,776 + PP_0730 0.39 -1.5
847,776 + PP_0730 0.39 +1.0
847,776 + PP_0730 0.39 -0.3
847,776 + PP_0730 0.39 +1.3
847,777 - PP_0730 0.40 -0.5
847,777 - PP_0730 0.40 -0.0
847,777 - PP_0730 0.40 +0.6
847,777 - PP_0730 0.40 +0.2
847,838 + PP_0730 0.44 -1.1
847,839 - PP_0730 0.44 +0.3
847,849 + PP_0730 0.45 -0.8
847,931 - PP_0730 0.51 +0.7
847,941 + PP_0730 0.52 +0.8
847,941 + PP_0730 0.52 +0.6
847,941 + PP_0730 0.52 -0.1
847,941 + PP_0730 0.52 -0.2
847,942 - PP_0730 0.52 +1.6
847,942 - PP_0730 0.52 +0.5
847,942 - PP_0730 0.52 -1.5
847,942 - PP_0730 0.52 -0.0
847,956 + PP_0730 0.53 -0.3
847,984 + PP_0730 0.55 -0.3
847,984 + PP_0730 0.55 +0.0
847,985 - PP_0730 0.55 -0.4
847,985 - PP_0730 0.55 +0.1
847,985 - PP_0730 0.55 +0.6
847,985 - PP_0730 0.55 +0.5
848,054 + PP_0730 0.61 -1.0
848,054 + PP_0730 0.61 +0.7
848,054 + PP_0730 0.61 +0.1
848,150 + PP_0730 0.68 +0.5
848,150 + PP_0730 0.68 +1.1
848,150 + PP_0730 0.68 +1.1
848,151 - PP_0730 0.68 -0.1
848,151 - PP_0730 0.68 +0.4
848,151 - PP_0730 0.68 -0.4
848,153 + PP_0730 0.68 -1.3
848,153 + PP_0730 0.68 +0.4
848,153 + PP_0730 0.68 -0.2
848,154 - PP_0730 0.68 -0.7
848,154 - PP_0730 0.68 +0.2
848,174 + PP_0730 0.70 -0.8
848,175 - PP_0730 0.70 +0.7
848,214 + PP_0730 0.73 -1.2
848,214 + PP_0730 0.73 -1.7
848,215 - PP_0730 0.73 -0.1
848,215 - PP_0730 0.73 -4.0
848,215 - PP_0730 0.73 +0.7
848,215 - PP_0730 0.73 -1.7
848,215 - PP_0730 0.73 -0.4
848,215 - PP_0730 0.73 +0.8
848,217 - PP_0730 0.73 -1.1
848,239 - PP_0730 0.75 +0.9
848,285 + PP_0730 0.78 -0.9
848,286 - PP_0730 0.78 -0.8
848,288 + PP_0730 0.78 -0.2
848,288 + PP_0730 0.78 +0.4
848,288 + PP_0730 0.78 +0.1
848,288 + PP_0730 0.78 +0.1
848,288 + PP_0730 0.78 +0.5
848,288 + PP_0730 0.78 -0.3
848,289 - PP_0730 0.79 -1.5
848,306 - PP_0730 0.80 -0.8
848,394 + PP_0730 0.87 +0.2
848,394 + PP_0730 0.87 -3.1
848,394 + PP_0730 0.87 +0.1
848,395 - PP_0730 0.87 +0.2
848,395 - PP_0730 0.87 +0.0
848,395 - PP_0730 0.87 -0.7
848,395 - PP_0730 0.87 -1.6
848,406 + PP_0730 0.87 +0.7
848,406 + PP_0730 0.87 +0.6
848,406 + PP_0730 0.87 +0.4
848,407 - PP_0730 0.88 -1.5
848,415 + PP_0730 0.88 -1.6
848,415 + PP_0730 0.88 +0.1
848,415 + PP_0730 0.88 +0.3
848,415 + PP_0730 0.88 -0.3
848,416 - PP_0730 0.88 -0.8
848,537 + -1.0
848,538 - -1.1
848,583 + +0.0
848,598 + +0.5
848,603 - -0.7
848,603 - +1.9
848,655 + +0.9
848,656 - +1.1
848,656 - -0.2
848,781 + PP_0731 0.11 +1.2
848,781 + PP_0731 0.11 +0.1
848,781 + PP_0731 0.11 -1.1
848,782 - PP_0731 0.11 -0.2
848,782 - PP_0731 0.11 +0.6
848,874 - PP_0731 0.16 -0.9
848,913 - PP_0731 0.18 +0.8
848,913 - PP_0731 0.18 -0.4
848,967 - PP_0731 0.21 +1.5
848,967 - PP_0731 0.21 +1.1
849,009 + PP_0731 0.23 -1.9
849,140 + PP_0731 0.30 +0.3
849,143 + PP_0731 0.31 -1.9
849,224 + PP_0731 0.35 -0.2
849,302 - PP_0731 0.39 +1.0
849,302 - PP_0731 0.39 -0.4
849,328 - PP_0731 0.41 +1.3
849,328 - PP_0731 0.41 -0.1
849,371 + PP_0731 0.43 -0.3
849,571 + PP_0731 0.54 +0.7
849,572 - PP_0731 0.54 +0.0
849,575 + PP_0731 0.54 -0.7
849,576 - PP_0731 0.54 -1.1
849,589 + PP_0731 0.55 -0.4
849,589 + PP_0731 0.55 -0.0
849,589 + PP_0731 0.55 -1.0
849,590 - PP_0731 0.55 -1.5
849,641 - PP_0731 0.58 +1.3
849,666 + PP_0731 0.59 +0.5
849,667 - PP_0731 0.59 +1.1
849,667 - PP_0731 0.59 +1.4
849,667 - PP_0731 0.59 +1.2
849,760 - PP_0731 0.64 +1.0
849,760 - PP_0731 0.64 -0.9
849,783 + PP_0731 0.65 -1.0
849,866 + PP_0731 0.70 +0.3
849,866 + PP_0731 0.70 -1.5
849,866 + PP_0731 0.70 -1.6
849,866 + PP_0731 0.70 -0.3
849,867 - PP_0731 0.70 -0.0
849,871 - PP_0731 0.70 -0.9
849,871 - PP_0731 0.70 +0.7
849,871 - PP_0731 0.70 +0.6
849,950 + PP_0731 0.75 +1.1
850,038 + PP_0731 0.79 +0.5
850,058 - PP_0731 0.80 +0.7
850,058 - PP_0731 0.80 +0.9
850,106 + PP_0731 0.83 -2.9
850,205 + PP_0731 0.88 -0.3
850,205 + PP_0731 0.88 +0.3
850,205 + PP_0731 0.88 +1.1
850,206 - PP_0731 0.88 +1.2
850,206 - PP_0731 0.88 +1.4
850,209 + PP_0731 0.89 +0.7
850,294 + -0.3
850,433 + +0.3
850,434 - +0.8
850,740 + +0.8
850,741 - -0.4
850,741 - +1.3
850,741 - +0.3
850,926 + +0.5
851,103 - +0.8
851,112 + +0.1
851,113 - -0.4

Or see this region's nucleotide sequence