Strain Fitness in Pseudomonas putida KT2440 around PP_0307

Experiment: Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_5442 and PP_0306 are separated by 73 nucleotidesPP_0306 and PP_0307 are separated by 102 nucleotidesPP_0307 and PP_0308 are separated by 270 nucleotides PP_5442: PP_5442 - protein of unknown function, at 366,697 to 367,314 _5442 PP_0306: PP_0306 - conserved protein of unknown function, at 367,388 to 368,116 _0306 PP_0307: PP_0307 - conserved exported protein of unknown function, at 368,219 to 368,650 _0307 PP_0308: PP_0308 - putative dipeptidase, at 368,921 to 369,898 _0308 Position (kb) 368 369Strain fitness (log2 ratio) -2 -1 0 1 2at 367.236 kb on + strand, within PP_5442at 367.236 kb on + strand, within PP_5442at 367.236 kb on + strand, within PP_5442at 367.237 kb on - strand, within PP_5442at 367.305 kb on + strandat 367.306 kb on - strandat 367.393 kb on + strandat 367.560 kb on + strand, within PP_0306at 367.884 kb on + strand, within PP_0306at 367.885 kb on - strand, within PP_0306at 368.025 kb on - strand, within PP_0306at 368.096 kb on + strandat 368.096 kb on + strandat 368.097 kb on - strandat 368.146 kb on - strandat 368.157 kb on - strandat 368.325 kb on + strand, within PP_0307at 368.326 kb on - strand, within PP_0307at 368.412 kb on - strand, within PP_0307at 368.412 kb on - strand, within PP_0307at 368.698 kb on + strandat 368.698 kb on + strandat 368.698 kb on + strandat 368.699 kb on - strandat 368.699 kb on - strandat 368.855 kb on + strandat 368.855 kb on + strandat 368.855 kb on + strandat 368.855 kb on + strandat 368.855 kb on + strandat 368.855 kb on + strandat 368.855 kb on + strandat 368.856 kb on - strandat 368.856 kb on - strandat 368.902 kb on + strandat 368.902 kb on + strandat 368.903 kb on - strandat 368.904 kb on + strandat 368.905 kb on - strandat 368.937 kb on + strandat 368.938 kb on - strandat 368.938 kb on - strandat 369.230 kb on + strand, within PP_0308at 369.230 kb on + strand, within PP_0308at 369.230 kb on + strand, within PP_0308at 369.231 kb on - strand, within PP_0308at 369.231 kb on - strand, within PP_0308at 369.231 kb on - strand, within PP_0308at 369.231 kb on - strand, within PP_0308at 369.231 kb on - strand, within PP_0308at 369.231 kb on - strand, within PP_0308at 369.278 kb on + strand, within PP_0308at 369.278 kb on + strand, within PP_0308at 369.278 kb on + strand, within PP_0308at 369.279 kb on - strand, within PP_0308at 369.311 kb on + strand, within PP_0308at 369.312 kb on - strand, within PP_0308at 369.312 kb on - strand, within PP_0308at 369.453 kb on - strand, within PP_0308at 369.602 kb on + strand, within PP_0308at 369.603 kb on - strand, within PP_0308at 369.620 kb on + strand, within PP_0308at 369.620 kb on + strand, within PP_0308at 369.620 kb on + strand, within PP_0308at 369.621 kb on - strand, within PP_0308at 369.621 kb on - strand, within PP_0308

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Per-strain Table

Position Strand Gene LocusTag Fraction Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs
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367,236 + PP_5442 0.87 -2.3
367,236 + PP_5442 0.87 -0.7
367,236 + PP_5442 0.87 -2.1
367,237 - PP_5442 0.87 -1.2
367,305 + +0.3
367,306 - -0.3
367,393 + -0.4
367,560 + PP_0306 0.24 -0.3
367,884 + PP_0306 0.68 -0.3
367,885 - PP_0306 0.68 +0.7
368,025 - PP_0306 0.87 -0.9
368,096 + -1.9
368,096 + +0.5
368,097 - +0.3
368,146 - -0.8
368,157 - -1.1
368,325 + PP_0307 0.25 +0.7
368,326 - PP_0307 0.25 +1.2
368,412 - PP_0307 0.45 -0.4
368,412 - PP_0307 0.45 +0.2
368,698 + +2.3
368,698 + +0.5
368,698 + +1.2
368,699 - -0.4
368,699 - +0.8
368,855 + +0.1
368,855 + +1.2
368,855 + +0.2
368,855 + +1.5
368,855 + +0.4
368,855 + +0.6
368,855 + +1.0
368,856 - -2.1
368,856 - +0.0
368,902 + -1.4
368,902 + -0.7
368,903 - -1.8
368,904 + +1.6
368,905 - -0.0
368,937 + +0.1
368,938 - +0.2
368,938 - +0.7
369,230 + PP_0308 0.32 +0.7
369,230 + PP_0308 0.32 -0.2
369,230 + PP_0308 0.32 +0.3
369,231 - PP_0308 0.32 -1.9
369,231 - PP_0308 0.32 -1.2
369,231 - PP_0308 0.32 +0.3
369,231 - PP_0308 0.32 +0.1
369,231 - PP_0308 0.32 +0.2
369,231 - PP_0308 0.32 -0.5
369,278 + PP_0308 0.37 -2.4
369,278 + PP_0308 0.37 -0.0
369,278 + PP_0308 0.37 +1.3
369,279 - PP_0308 0.37 +1.1
369,311 + PP_0308 0.40 -0.7
369,312 - PP_0308 0.40 -1.5
369,312 - PP_0308 0.40 +0.1
369,453 - PP_0308 0.54 -1.1
369,602 + PP_0308 0.70 +0.3
369,603 - PP_0308 0.70 +0.5
369,620 + PP_0308 0.71 +0.4
369,620 + PP_0308 0.71 -0.1
369,620 + PP_0308 0.71 -0.9
369,621 - PP_0308 0.72 +0.4
369,621 - PP_0308 0.72 -0.4

Or see this region's nucleotide sequence