Strain Fitness in Pseudomonas putida KT2440 around PP_3693

Experiment: Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_3692 and PP_5621 are separated by 68 nucleotidesPP_5621 and PP_3693 are separated by 49 nucleotidesPP_3693 and PP_3694 are separated by 164 nucleotides PP_3692: PP_3692 - conserved protein of unknown function, at 4,208,048 to 4,210,723 _3692 PP_5621: PP_5621 - protein of unknown function, at 4,210,792 to 4,211,076 _5621 PP_3693: PP_3693 - putative Transcriptional regulator MvaT, P16 subunit, at 4,211,126 to 4,211,491 _3693 PP_3694: PP_3694 - conserved protein of unknown function, at 4,211,656 to 4,212,615 _3694 Position (kb) 4211 4212Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4210.149 kb on + strand, within PP_3692at 4210.280 kb on - strand, within PP_3692at 4210.291 kb on + strandat 4210.352 kb on + strand, within PP_3692at 4210.353 kb on - strand, within PP_3692at 4210.415 kb on + strand, within PP_3692at 4210.415 kb on + strand, within PP_3692at 4210.415 kb on + strand, within PP_3692at 4210.415 kb on + strand, within PP_3692at 4210.415 kb on + strand, within PP_3692at 4210.416 kb on - strand, within PP_3692at 4210.500 kb on + strandat 4210.501 kb on - strandat 4210.525 kb on + strandat 4210.543 kb on + strandat 4210.543 kb on + strandat 4210.543 kb on + strandat 4210.544 kb on - strandat 4210.544 kb on - strandat 4210.544 kb on - strandat 4210.544 kb on - strandat 4210.602 kb on - strandat 4210.656 kb on + strandat 4210.656 kb on + strandat 4210.690 kb on + strandat 4210.690 kb on + strandat 4210.691 kb on - strandat 4210.721 kb on + strandat 4210.721 kb on + strandat 4210.721 kb on + strandat 4210.722 kb on - strandat 4210.722 kb on - strandat 4210.729 kb on + strandat 4210.730 kb on - strandat 4210.773 kb on - strandat 4210.789 kb on + strandat 4210.789 kb on + strandat 4210.789 kb on + strandat 4210.790 kb on - strandat 4210.790 kb on - strandat 4210.790 kb on - strandat 4210.790 kb on - strandat 4210.790 kb on - strandat 4210.819 kb on + strandat 4210.820 kb on - strandat 4210.820 kb on - strandat 4210.843 kb on - strand, within PP_5621at 4211.029 kb on - strand, within PP_5621at 4211.029 kb on - strand, within PP_5621at 4211.066 kb on + strandat 4211.066 kb on + strandat 4211.066 kb on + strandat 4211.093 kb on - strandat 4211.103 kb on + strandat 4211.116 kb on + strandat 4211.131 kb on + strandat 4211.164 kb on - strand, within PP_3693at 4211.241 kb on + strand, within PP_3693at 4211.250 kb on - strand, within PP_3693at 4211.330 kb on + strand, within PP_3693at 4211.331 kb on - strand, within PP_3693at 4211.352 kb on + strand, within PP_3693at 4211.352 kb on + strand, within PP_3693at 4211.353 kb on - strand, within PP_3693at 4211.492 kb on + strandat 4211.492 kb on + strandat 4211.493 kb on - strandat 4211.510 kb on + strandat 4211.511 kb on - strandat 4211.522 kb on + strandat 4211.620 kb on + strandat 4211.620 kb on + strandat 4211.621 kb on - strandat 4211.629 kb on - strandat 4211.629 kb on - strandat 4211.637 kb on + strandat 4211.637 kb on + strandat 4211.645 kb on + strandat 4211.678 kb on - strandat 4211.678 kb on - strandat 4211.678 kb on - strandat 4211.683 kb on + strandat 4211.683 kb on + strandat 4211.683 kb on + strandat 4211.688 kb on - strandat 4211.688 kb on - strandat 4211.748 kb on + strandat 4211.773 kb on - strand, within PP_3694at 4211.788 kb on - strand, within PP_3694at 4211.788 kb on - strand, within PP_3694at 4211.788 kb on - strand, within PP_3694at 4211.799 kb on + strand, within PP_3694at 4211.800 kb on - strand, within PP_3694at 4211.800 kb on - strand, within PP_3694at 4211.835 kb on + strand, within PP_3694at 4211.836 kb on - strand, within PP_3694at 4211.836 kb on - strand, within PP_3694at 4211.847 kb on - strand, within PP_3694at 4211.857 kb on + strand, within PP_3694at 4211.858 kb on - strand, within PP_3694at 4211.858 kb on - strand, within PP_3694at 4211.908 kb on + strand, within PP_3694at 4211.932 kb on + strand, within PP_3694at 4211.933 kb on - strand, within PP_3694at 4211.933 kb on - strand, within PP_3694at 4211.933 kb on - strand, within PP_3694at 4211.933 kb on - strand, within PP_3694at 4211.933 kb on - strand, within PP_3694at 4211.943 kb on + strand, within PP_3694at 4211.944 kb on - strand, within PP_3694at 4211.958 kb on - strand, within PP_3694at 4212.006 kb on + strand, within PP_3694at 4212.007 kb on - strand, within PP_3694at 4212.110 kb on + strand, within PP_3694at 4212.134 kb on + strand, within PP_3694at 4212.134 kb on + strand, within PP_3694at 4212.144 kb on + strand, within PP_3694at 4212.144 kb on + strand, within PP_3694at 4212.144 kb on + strand, within PP_3694at 4212.158 kb on - strand, within PP_3694at 4212.158 kb on - strand, within PP_3694at 4212.174 kb on + strand, within PP_3694at 4212.175 kb on - strand, within PP_3694at 4212.183 kb on + strand, within PP_3694at 4212.184 kb on - strand, within PP_3694at 4212.187 kb on + strand, within PP_3694at 4212.228 kb on + strand, within PP_3694at 4212.267 kb on + strand, within PP_3694at 4212.267 kb on + strand, within PP_3694at 4212.267 kb on + strand, within PP_3694at 4212.267 kb on + strand, within PP_3694at 4212.268 kb on - strand, within PP_3694at 4212.268 kb on - strand, within PP_3694at 4212.268 kb on - strand, within PP_3694at 4212.268 kb on - strand, within PP_3694at 4212.294 kb on - strand, within PP_3694at 4212.301 kb on + strand, within PP_3694at 4212.302 kb on - strand, within PP_3694at 4212.340 kb on + strand, within PP_3694at 4212.340 kb on + strand, within PP_3694at 4212.341 kb on - strand, within PP_3694at 4212.341 kb on - strand, within PP_3694at 4212.393 kb on - strand, within PP_3694at 4212.393 kb on - strand, within PP_3694at 4212.404 kb on + strand, within PP_3694at 4212.404 kb on + strand, within PP_3694at 4212.404 kb on + strand, within PP_3694at 4212.405 kb on - strand, within PP_3694at 4212.405 kb on - strand, within PP_3694at 4212.405 kb on - strand, within PP_3694at 4212.466 kb on + strand, within PP_3694at 4212.466 kb on + strand, within PP_3694at 4212.466 kb on + strand, within PP_3694at 4212.466 kb on + strand, within PP_3694at 4212.466 kb on + strand, within PP_3694at 4212.466 kb on + strand, within PP_3694at 4212.467 kb on - strand, within PP_3694at 4212.467 kb on - strand, within PP_3694at 4212.471 kb on - strand, within PP_3694

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Per-strain Table

Position Strand Gene LocusTag Fraction Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs
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4,210,149 + PP_3692 0.79 -1.0
4,210,280 - PP_3692 0.83 +0.2
4,210,291 + +1.2
4,210,352 + PP_3692 0.86 +0.2
4,210,353 - PP_3692 0.86 -1.6
4,210,415 + PP_3692 0.88 -0.1
4,210,415 + PP_3692 0.88 +2.0
4,210,415 + PP_3692 0.88 +0.5
4,210,415 + PP_3692 0.88 -0.4
4,210,415 + PP_3692 0.88 +0.4
4,210,416 - PP_3692 0.88 +0.8
4,210,500 + -1.2
4,210,501 - -0.6
4,210,525 + -0.5
4,210,543 + +0.4
4,210,543 + -0.3
4,210,543 + -0.4
4,210,544 - -0.5
4,210,544 - +0.3
4,210,544 - +0.3
4,210,544 - +0.2
4,210,602 - +0.2
4,210,656 + +0.4
4,210,656 + -0.9
4,210,690 + +0.0
4,210,690 + -1.6
4,210,691 - +1.5
4,210,721 + -0.3
4,210,721 + +0.2
4,210,721 + -0.9
4,210,722 - +0.5
4,210,722 - -0.1
4,210,729 + +0.4
4,210,730 - -0.2
4,210,773 - -0.5
4,210,789 + +0.1
4,210,789 + +0.3
4,210,789 + -1.5
4,210,790 - +0.1
4,210,790 - -1.4
4,210,790 - +0.8
4,210,790 - +0.4
4,210,790 - +0.3
4,210,819 + -1.9
4,210,820 - -0.1
4,210,820 - +0.7
4,210,843 - PP_5621 0.18 +0.3
4,211,029 - PP_5621 0.83 -1.3
4,211,029 - PP_5621 0.83 -0.0
4,211,066 + -0.1
4,211,066 + +0.6
4,211,066 + -0.2
4,211,093 - +0.6
4,211,103 + +0.1
4,211,116 + +0.6
4,211,131 + +1.0
4,211,164 - PP_3693 0.10 +0.5
4,211,241 + PP_3693 0.31 +0.6
4,211,250 - PP_3693 0.34 +1.4
4,211,330 + PP_3693 0.56 +0.4
4,211,331 - PP_3693 0.56 +0.7
4,211,352 + PP_3693 0.62 -0.0
4,211,352 + PP_3693 0.62 +0.9
4,211,353 - PP_3693 0.62 +0.9
4,211,492 + -0.0
4,211,492 + +0.9
4,211,493 - +0.7
4,211,510 + +0.2
4,211,511 - -1.6
4,211,522 + -0.3
4,211,620 + -0.9
4,211,620 + -0.4
4,211,621 - +0.6
4,211,629 - -1.2
4,211,629 - -2.8
4,211,637 + -1.3
4,211,637 + -0.6
4,211,645 + -0.4
4,211,678 - -1.6
4,211,678 - -1.0
4,211,678 - +1.3
4,211,683 + +0.3
4,211,683 + -0.0
4,211,683 + -0.2
4,211,688 - -0.1
4,211,688 - +0.0
4,211,748 + +0.3
4,211,773 - PP_3694 0.12 -0.9
4,211,788 - PP_3694 0.14 -0.1
4,211,788 - PP_3694 0.14 -0.1
4,211,788 - PP_3694 0.14 +0.8
4,211,799 + PP_3694 0.15 +0.0
4,211,800 - PP_3694 0.15 -0.3
4,211,800 - PP_3694 0.15 +0.0
4,211,835 + PP_3694 0.19 +0.5
4,211,836 - PP_3694 0.19 -0.1
4,211,836 - PP_3694 0.19 -0.0
4,211,847 - PP_3694 0.20 +0.5
4,211,857 + PP_3694 0.21 +0.0
4,211,858 - PP_3694 0.21 -0.8
4,211,858 - PP_3694 0.21 -0.4
4,211,908 + PP_3694 0.26 +0.2
4,211,932 + PP_3694 0.29 -1.0
4,211,933 - PP_3694 0.29 +0.7
4,211,933 - PP_3694 0.29 -0.3
4,211,933 - PP_3694 0.29 +0.6
4,211,933 - PP_3694 0.29 -0.1
4,211,933 - PP_3694 0.29 -1.0
4,211,943 + PP_3694 0.30 +0.2
4,211,944 - PP_3694 0.30 -0.4
4,211,958 - PP_3694 0.31 -0.6
4,212,006 + PP_3694 0.36 -1.0
4,212,007 - PP_3694 0.37 +1.6
4,212,110 + PP_3694 0.47 +0.1
4,212,134 + PP_3694 0.50 -0.2
4,212,134 + PP_3694 0.50 +0.0
4,212,144 + PP_3694 0.51 -0.0
4,212,144 + PP_3694 0.51 -0.6
4,212,144 + PP_3694 0.51 +0.3
4,212,158 - PP_3694 0.52 -0.6
4,212,158 - PP_3694 0.52 +0.1
4,212,174 + PP_3694 0.54 -1.6
4,212,175 - PP_3694 0.54 -1.2
4,212,183 + PP_3694 0.55 -0.4
4,212,184 - PP_3694 0.55 +0.5
4,212,187 + PP_3694 0.55 -0.3
4,212,228 + PP_3694 0.60 +0.6
4,212,267 + PP_3694 0.64 -0.3
4,212,267 + PP_3694 0.64 -1.2
4,212,267 + PP_3694 0.64 +0.4
4,212,267 + PP_3694 0.64 +0.1
4,212,268 - PP_3694 0.64 -0.9
4,212,268 - PP_3694 0.64 +0.8
4,212,268 - PP_3694 0.64 -0.9
4,212,268 - PP_3694 0.64 -0.3
4,212,294 - PP_3694 0.66 +0.1
4,212,301 + PP_3694 0.67 +0.8
4,212,302 - PP_3694 0.67 -0.2
4,212,340 + PP_3694 0.71 +0.1
4,212,340 + PP_3694 0.71 -0.9
4,212,341 - PP_3694 0.71 +1.3
4,212,341 - PP_3694 0.71 -0.6
4,212,393 - PP_3694 0.77 +0.6
4,212,393 - PP_3694 0.77 +0.2
4,212,404 + PP_3694 0.78 -1.5
4,212,404 + PP_3694 0.78 -0.1
4,212,404 + PP_3694 0.78 -1.3
4,212,405 - PP_3694 0.78 -0.5
4,212,405 - PP_3694 0.78 +0.1
4,212,405 - PP_3694 0.78 +1.0
4,212,466 + PP_3694 0.84 -1.7
4,212,466 + PP_3694 0.84 +0.9
4,212,466 + PP_3694 0.84 -1.0
4,212,466 + PP_3694 0.84 +0.7
4,212,466 + PP_3694 0.84 +1.5
4,212,466 + PP_3694 0.84 +0.6
4,212,467 - PP_3694 0.84 +0.8
4,212,467 - PP_3694 0.84 +0.0
4,212,471 - PP_3694 0.85 +1.1

Or see this region's nucleotide sequence