Strain Fitness in Pseudomonas putida KT2440 around PP_1736

Experiment: Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_1735 and PP_1736 are separated by 27 nucleotidesPP_1736 and PP_1737 are separated by 89 nucleotidesPP_1737 and PP_1738 are separated by 73 nucleotides PP_1735: PP_1735 - Lipid A biosynthesis lauroyl acyltransferase, at 1,934,736 to 1,935,671 _1735 PP_1736: PP_1736 - conserved protein of unknown function, at 1,935,699 to 1,936,847 _1736 PP_1737: PP_1737 - conserved protein of unknown function, at 1,936,937 to 1,937,683 _1737 PP_1738: PP_1738 - conserved exported protein of unknown function, at 1,937,757 to 1,939,055 _1738 Position (kb) 1935 1936 1937Strain fitness (log2 ratio) -2 -1 0 1 2at 1934.760 kb on + strandat 1935.652 kb on - strandat 1935.681 kb on + strandat 1935.682 kb on - strandat 1935.682 kb on - strandat 1935.756 kb on + strandat 1935.757 kb on - strandat 1936.177 kb on - strand, within PP_1736at 1936.499 kb on + strand, within PP_1736at 1936.500 kb on - strand, within PP_1736at 1936.500 kb on - strand, within PP_1736at 1936.767 kb on + strandat 1936.767 kb on + strandat 1936.767 kb on + strandat 1936.767 kb on + strandat 1936.768 kb on - strandat 1936.768 kb on - strandat 1936.768 kb on - strandat 1936.901 kb on + strandat 1936.901 kb on + strandat 1936.901 kb on + strandat 1936.939 kb on - strandat 1936.939 kb on - strandat 1936.947 kb on - strandat 1936.970 kb on - strandat 1936.971 kb on + strandat 1936.971 kb on + strandat 1936.971 kb on + strandat 1936.971 kb on + strandat 1936.971 kb on + strandat 1936.971 kb on + strandat 1936.972 kb on - strandat 1936.972 kb on - strandat 1936.972 kb on - strandat 1936.972 kb on - strandat 1936.972 kb on - strandat 1936.972 kb on - strandat 1936.977 kb on + strandat 1936.977 kb on + strandat 1936.978 kb on - strandat 1936.992 kb on + strandat 1937.035 kb on + strand, within PP_1737at 1937.036 kb on - strand, within PP_1737at 1937.037 kb on + strand, within PP_1737at 1937.038 kb on - strand, within PP_1737at 1937.106 kb on + strand, within PP_1737at 1937.106 kb on + strand, within PP_1737at 1937.107 kb on - strand, within PP_1737at 1937.130 kb on + strand, within PP_1737at 1937.131 kb on - strand, within PP_1737at 1937.174 kb on + strand, within PP_1737at 1937.175 kb on - strand, within PP_1737at 1937.214 kb on + strand, within PP_1737at 1937.214 kb on + strand, within PP_1737at 1937.215 kb on - strand, within PP_1737at 1937.215 kb on - strand, within PP_1737at 1937.215 kb on - strand, within PP_1737at 1937.215 kb on - strand, within PP_1737at 1937.215 kb on - strand, within PP_1737at 1937.442 kb on + strand, within PP_1737at 1937.442 kb on + strand, within PP_1737at 1937.442 kb on + strand, within PP_1737at 1937.442 kb on + strand, within PP_1737at 1937.442 kb on + strand, within PP_1737at 1937.442 kb on + strand, within PP_1737at 1937.442 kb on + strand, within PP_1737at 1937.442 kb on + strand, within PP_1737at 1937.442 kb on + strand, within PP_1737at 1937.443 kb on - strand, within PP_1737at 1937.443 kb on - strand, within PP_1737at 1937.443 kb on - strand, within PP_1737at 1937.443 kb on - strand, within PP_1737at 1937.443 kb on - strand, within PP_1737at 1937.443 kb on - strand, within PP_1737at 1937.443 kb on - strand, within PP_1737at 1937.490 kb on + strand, within PP_1737at 1937.490 kb on + strand, within PP_1737at 1937.491 kb on - strand, within PP_1737at 1937.491 kb on - strand, within PP_1737at 1937.503 kb on - strand, within PP_1737at 1937.535 kb on + strand, within PP_1737at 1937.801 kb on - strandat 1937.801 kb on - strandat 1937.801 kb on - strandat 1937.801 kb on - strandat 1937.834 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs
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1,934,760 + +0.5
1,935,652 - -0.5
1,935,681 + -0.3
1,935,682 - +1.6
1,935,682 - -1.3
1,935,756 + -0.5
1,935,757 - -1.1
1,936,177 - PP_1736 0.42 +1.6
1,936,499 + PP_1736 0.70 -0.3
1,936,500 - PP_1736 0.70 +0.8
1,936,500 - PP_1736 0.70 +0.3
1,936,767 + +0.4
1,936,767 + +0.4
1,936,767 + -0.8
1,936,767 + -1.1
1,936,768 - +0.2
1,936,768 - +0.1
1,936,768 - +0.7
1,936,901 + -0.8
1,936,901 + +0.1
1,936,901 + +0.6
1,936,939 - -0.4
1,936,939 - -0.5
1,936,947 - +0.5
1,936,970 - -0.2
1,936,971 + +0.1
1,936,971 + -0.2
1,936,971 + +0.4
1,936,971 + -0.1
1,936,971 + +0.0
1,936,971 + -0.2
1,936,972 - +0.3
1,936,972 - -0.5
1,936,972 - +0.2
1,936,972 - -0.8
1,936,972 - -0.2
1,936,972 - -0.7
1,936,977 + +0.3
1,936,977 + -0.3
1,936,978 - +0.1
1,936,992 + -0.5
1,937,035 + PP_1737 0.13 +0.4
1,937,036 - PP_1737 0.13 -1.6
1,937,037 + PP_1737 0.13 +0.2
1,937,038 - PP_1737 0.14 +0.2
1,937,106 + PP_1737 0.23 -0.5
1,937,106 + PP_1737 0.23 -0.3
1,937,107 - PP_1737 0.23 -2.4
1,937,130 + PP_1737 0.26 +0.7
1,937,131 - PP_1737 0.26 +0.5
1,937,174 + PP_1737 0.32 -0.1
1,937,175 - PP_1737 0.32 +0.8
1,937,214 + PP_1737 0.37 -0.6
1,937,214 + PP_1737 0.37 -0.7
1,937,215 - PP_1737 0.37 -0.6
1,937,215 - PP_1737 0.37 -0.1
1,937,215 - PP_1737 0.37 -0.8
1,937,215 - PP_1737 0.37 -0.2
1,937,215 - PP_1737 0.37 -0.2
1,937,442 + PP_1737 0.68 -0.5
1,937,442 + PP_1737 0.68 +0.3
1,937,442 + PP_1737 0.68 -0.8
1,937,442 + PP_1737 0.68 +2.3
1,937,442 + PP_1737 0.68 -0.5
1,937,442 + PP_1737 0.68 -0.2
1,937,442 + PP_1737 0.68 -0.0
1,937,442 + PP_1737 0.68 -0.0
1,937,442 + PP_1737 0.68 +0.0
1,937,443 - PP_1737 0.68 -0.6
1,937,443 - PP_1737 0.68 -0.7
1,937,443 - PP_1737 0.68 +0.7
1,937,443 - PP_1737 0.68 -0.4
1,937,443 - PP_1737 0.68 +0.1
1,937,443 - PP_1737 0.68 -0.8
1,937,443 - PP_1737 0.68 -0.2
1,937,490 + PP_1737 0.74 -0.0
1,937,490 + PP_1737 0.74 +0.1
1,937,491 - PP_1737 0.74 +0.5
1,937,491 - PP_1737 0.74 +0.3
1,937,503 - PP_1737 0.76 +0.0
1,937,535 + PP_1737 0.80 +0.9
1,937,801 - +0.6
1,937,801 - +0.3
1,937,801 - -0.5
1,937,801 - -0.2
1,937,834 - -0.2

Or see this region's nucleotide sequence