Experiment: Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_5449 and PP_0639 are separated by 199 nucleotides PP_0639 and PP_0640 overlap by 4 nucleotides
PP_5449: PP_5449 - conserved exported protein of unknown function, at 747,948 to 748,766
_5449
PP_0639: PP_0639 - conserved protein of unknown function, at 748,966 to 749,682
_0639
PP_0640: PP_0640 - conserved protein of unknown function, at 749,679 to 750,863
_0640
Position (kb) 748
749
750 Strain fitness (log2 ratio) -2
-1
0
1 at 747.977 kb on - strand at 748.034 kb on + strand, within PP_5449 at 748.034 kb on + strand, within PP_5449 at 748.035 kb on - strand, within PP_5449 at 748.035 kb on - strand, within PP_5449 at 748.039 kb on - strand, within PP_5449 at 748.039 kb on - strand, within PP_5449 at 748.110 kb on - strand, within PP_5449 at 748.127 kb on + strand, within PP_5449 at 748.253 kb on + strand, within PP_5449 at 748.312 kb on - strand, within PP_5449 at 748.328 kb on - strand, within PP_5449 at 748.494 kb on - strand, within PP_5449 at 748.566 kb on + strand, within PP_5449 at 748.738 kb on - strand at 748.773 kb on - strand at 748.812 kb on + strand at 748.812 kb on + strand at 748.879 kb on + strand at 748.880 kb on - strand at 749.101 kb on - strand, within PP_0639 at 749.141 kb on + strand, within PP_0639 at 749.239 kb on - strand, within PP_0639 at 749.279 kb on - strand, within PP_0639 at 749.308 kb on + strand, within PP_0639 at 749.309 kb on - strand, within PP_0639 at 749.309 kb on - strand, within PP_0639 at 749.315 kb on - strand, within PP_0639 at 749.355 kb on + strand, within PP_0639 at 749.421 kb on - strand, within PP_0639 at 749.652 kb on - strand at 749.652 kb on - strand at 749.704 kb on + strand at 750.454 kb on - strand, within PP_0640 at 750.492 kb on - strand, within PP_0640 at 750.593 kb on + strand, within PP_0640 at 750.616 kb on + strand, within PP_0640 at 750.617 kb on - strand, within PP_0640 at 750.658 kb on - strand, within PP_0640
Per-strain Table
Position Strand Gene LocusTag Fraction Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs remove 747,977 - +1.0 748,034 + PP_5449 0.11 +0.5 748,034 + PP_5449 0.11 +0.6 748,035 - PP_5449 0.11 +0.8 748,035 - PP_5449 0.11 -0.1 748,039 - PP_5449 0.11 -1.3 748,039 - PP_5449 0.11 -0.9 748,110 - PP_5449 0.20 -0.2 748,127 + PP_5449 0.22 -0.5 748,253 + PP_5449 0.37 -1.7 748,312 - PP_5449 0.44 -0.9 748,328 - PP_5449 0.46 +0.1 748,494 - PP_5449 0.67 -1.9 748,566 + PP_5449 0.75 -0.2 748,738 - -1.2 748,773 - -0.2 748,812 + +1.0 748,812 + -1.0 748,879 + -0.0 748,880 - -0.4 749,101 - PP_0639 0.19 +0.0 749,141 + PP_0639 0.24 -0.6 749,239 - PP_0639 0.38 +0.1 749,279 - PP_0639 0.44 +0.3 749,308 + PP_0639 0.48 +1.1 749,309 - PP_0639 0.48 +0.7 749,309 - PP_0639 0.48 -1.0 749,315 - PP_0639 0.49 +1.5 749,355 + PP_0639 0.54 +0.2 749,421 - PP_0639 0.63 +0.5 749,652 - +1.0 749,652 - +0.7 749,704 + +0.7 750,454 - PP_0640 0.65 +0.4 750,492 - PP_0640 0.69 +0.7 750,593 + PP_0640 0.77 -0.4 750,616 + PP_0640 0.79 +1.0 750,617 - PP_0640 0.79 -0.1 750,658 - PP_0640 0.83 -0.8
Or see this region's nucleotide sequence