Experiment: Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0681 and PP_0682 are separated by 189 nucleotides PP_0682 and PP_0683 are separated by 76 nucleotides PP_0683 and PP_0684 are separated by 85 nucleotides PP_0684 and PP_0685 are separated by 26 nucleotides
PP_0681: PP_0681 - conserved protein of unknown function, at 796,460 to 796,798
_0681
PP_0682: PP_0682 - conserved inner membrane protein of unknown function, UPF0114 family, at 796,988 to 797,476
_0682
PP_0683: PP_0683 - conserved protein of unknown function, at 797,553 to 797,942
_0683
PP_0684: PP_0684 - FKBP-type peptidyl-prolyl cis-trans isomerase, at 798,028 to 798,645
_0684
PP_0685: PP_0685 - conserved protein of unknown function, at 798,672 to 798,917
_0685
Position (kb) 797
798 Strain fitness (log2 ratio) -2
-1
0
1 at 796.683 kb on - strand, within PP_0681 at 796.776 kb on - strand at 796.852 kb on + strand at 796.852 kb on + strand at 796.853 kb on - strand at 796.927 kb on + strand at 796.928 kb on - strand at 796.944 kb on + strand at 796.944 kb on + strand at 796.945 kb on - strand at 796.945 kb on - strand at 796.945 kb on - strand at 796.962 kb on + strand at 796.963 kb on - strand at 796.997 kb on - strand at 797.015 kb on + strand at 797.015 kb on + strand at 797.015 kb on + strand at 797.016 kb on - strand at 797.016 kb on - strand at 797.016 kb on - strand at 797.045 kb on + strand, within PP_0682 at 797.045 kb on + strand, within PP_0682 at 797.046 kb on - strand, within PP_0682 at 797.390 kb on + strand, within PP_0682 at 797.402 kb on + strand, within PP_0682 at 797.402 kb on + strand, within PP_0682 at 797.402 kb on + strand, within PP_0682 at 797.403 kb on - strand, within PP_0682 at 797.403 kb on - strand, within PP_0682 at 797.533 kb on + strand at 797.591 kb on - strand at 797.718 kb on + strand, within PP_0683 at 797.719 kb on - strand, within PP_0683 at 797.719 kb on - strand, within PP_0683 at 797.719 kb on - strand, within PP_0683 at 797.940 kb on + strand at 797.940 kb on + strand at 797.967 kb on - strand at 798.070 kb on + strand at 798.070 kb on + strand at 798.070 kb on + strand at 798.399 kb on + strand, within PP_0684 at 798.400 kb on - strand, within PP_0684 at 798.407 kb on - strand at 798.448 kb on + strand at 798.448 kb on + strand, within PP_0684 at 798.547 kb on + strand, within PP_0684 at 798.547 kb on + strand, within PP_0684 at 798.547 kb on + strand, within PP_0684 at 798.547 kb on + strand, within PP_0684 at 798.547 kb on + strand, within PP_0684 at 798.548 kb on - strand, within PP_0684 at 798.548 kb on - strand, within PP_0684 at 798.548 kb on - strand, within PP_0684 at 798.548 kb on - strand, within PP_0684 at 798.548 kb on - strand, within PP_0684 at 798.548 kb on - strand, within PP_0684 at 798.569 kb on - strand, within PP_0684 at 798.643 kb on + strand at 798.644 kb on - strand at 798.644 kb on - strand at 798.713 kb on - strand, within PP_0685 at 798.713 kb on - strand, within PP_0685 at 798.874 kb on + strand, within PP_0685 at 798.910 kb on + strand at 798.910 kb on + strand at 798.911 kb on - strand at 798.911 kb on - strand at 798.921 kb on + strand at 798.921 kb on + strand at 798.922 kb on - strand at 798.922 kb on - strand at 798.922 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs remove 796,683 - PP_0681 0.66 +1.2 796,776 - -0.3 796,852 + +0.3 796,852 + +0.1 796,853 - +0.8 796,927 + +0.3 796,928 - +0.1 796,944 + -0.9 796,944 + -0.6 796,945 - +0.9 796,945 - +0.0 796,945 - +1.5 796,962 + +0.9 796,963 - +0.1 796,997 - -0.1 797,015 + +0.9 797,015 + -0.1 797,015 + -0.4 797,016 - -0.2 797,016 - +0.2 797,016 - -0.5 797,045 + PP_0682 0.12 +1.7 797,045 + PP_0682 0.12 +0.6 797,046 - PP_0682 0.12 +0.0 797,390 + PP_0682 0.82 -1.3 797,402 + PP_0682 0.85 +0.6 797,402 + PP_0682 0.85 +0.4 797,402 + PP_0682 0.85 -0.4 797,403 - PP_0682 0.85 -0.0 797,403 - PP_0682 0.85 -0.3 797,533 + -0.4 797,591 - +0.1 797,718 + PP_0683 0.42 +0.2 797,719 - PP_0683 0.43 +1.3 797,719 - PP_0683 0.43 -1.3 797,719 - PP_0683 0.43 +0.3 797,940 + -0.6 797,940 + -0.1 797,967 - -1.8 798,070 + -0.8 798,070 + -0.5 798,070 + -0.7 798,399 + PP_0684 0.60 -0.6 798,400 - PP_0684 0.60 +0.6 798,407 - -0.1 798,448 + -0.5 798,448 + PP_0684 0.68 +0.4 798,547 + PP_0684 0.84 +1.3 798,547 + PP_0684 0.84 +0.2 798,547 + PP_0684 0.84 +0.4 798,547 + PP_0684 0.84 +0.1 798,547 + PP_0684 0.84 +0.3 798,548 - PP_0684 0.84 -2.0 798,548 - PP_0684 0.84 -0.9 798,548 - PP_0684 0.84 -0.5 798,548 - PP_0684 0.84 -0.4 798,548 - PP_0684 0.84 -0.1 798,548 - PP_0684 0.84 +0.7 798,569 - PP_0684 0.88 -0.8 798,643 + +0.4 798,644 - -0.1 798,644 - -0.1 798,713 - PP_0685 0.17 +0.5 798,713 - PP_0685 0.17 +1.6 798,874 + PP_0685 0.82 -0.4 798,910 + +0.9 798,910 + +0.9 798,911 - -0.6 798,911 - +0.1 798,921 + +0.2 798,921 + -0.7 798,922 - -0.8 798,922 - -1.4 798,922 - -0.5
Or see this region's nucleotide sequence