Strain Fitness in Pseudomonas putida KT2440 around PP_0132

Experiment: Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0131 and PP_0132 are separated by 14 nucleotidesPP_0132 and PP_0133 overlap by 4 nucleotides PP_0131: PP_0131 - putative membrane-anchored phosphodiesterase, at 137,100 to 138,707 _0131 PP_0132: PP_0132 - Alginate biosynthesis sensor protein KinB, at 138,722 to 140,503 _0132 PP_0133: PP_0133 - Alginate biosynthesis transcriptional regulatory protein AlgB, at 140,500 to 141,846 _0133 Position (kb) 138 139 140 141Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 137.799 kb on + strand, within PP_0131at 137.912 kb on - strand, within PP_0131at 137.992 kb on - strand, within PP_0131at 138.175 kb on + strand, within PP_0131at 138.175 kb on + strand, within PP_0131at 138.176 kb on - strand, within PP_0131at 138.176 kb on - strand, within PP_0131at 138.176 kb on - strand, within PP_0131at 138.196 kb on + strand, within PP_0131at 138.196 kb on + strand, within PP_0131at 138.196 kb on + strand, within PP_0131at 138.197 kb on - strand, within PP_0131at 138.197 kb on - strand, within PP_0131at 138.197 kb on - strand, within PP_0131at 138.198 kb on + strand, within PP_0131at 138.198 kb on + strand, within PP_0131at 138.198 kb on + strand, within PP_0131at 138.198 kb on + strand, within PP_0131at 138.198 kb on + strand, within PP_0131at 138.198 kb on + strand, within PP_0131at 138.198 kb on + strand, within PP_0131at 138.198 kb on + strand, within PP_0131at 138.198 kb on + strand, within PP_0131at 138.198 kb on + strand, within PP_0131at 138.198 kb on + strand, within PP_0131at 138.198 kb on + strand, within PP_0131at 138.199 kb on - strand, within PP_0131at 138.199 kb on - strand, within PP_0131at 138.199 kb on - strand, within PP_0131at 138.199 kb on - strand, within PP_0131at 138.199 kb on - strand, within PP_0131at 138.199 kb on - strand, within PP_0131at 138.199 kb on - strand, within PP_0131at 138.199 kb on - strand, within PP_0131at 138.199 kb on - strand, within PP_0131at 138.199 kb on - strand, within PP_0131at 138.199 kb on - strand, within PP_0131at 138.202 kb on + strand, within PP_0131at 138.202 kb on + strand, within PP_0131at 138.203 kb on - strand, within PP_0131at 138.243 kb on - strand, within PP_0131at 138.243 kb on - strand, within PP_0131at 138.243 kb on - strand, within PP_0131at 138.243 kb on - strand, within PP_0131at 138.243 kb on - strand, within PP_0131at 138.243 kb on - strand, within PP_0131at 138.365 kb on - strand, within PP_0131at 138.365 kb on - strand, within PP_0131at 138.365 kb on - strandat 138.411 kb on + strand, within PP_0131at 138.412 kb on - strand, within PP_0131at 138.426 kb on + strand, within PP_0131at 138.521 kb on + strand, within PP_0131at 138.522 kb on - strand, within PP_0131at 138.522 kb on - strand, within PP_0131at 138.618 kb on + strandat 138.618 kb on + strandat 138.618 kb on + strandat 138.619 kb on - strandat 138.619 kb on - strandat 138.706 kb on - strandat 138.741 kb on + strandat 138.742 kb on - strandat 138.855 kb on - strandat 138.855 kb on - strandat 138.894 kb on + strandat 138.985 kb on + strand, within PP_0132at 139.228 kb on + strand, within PP_0132at 139.229 kb on - strand, within PP_0132at 139.479 kb on + strand, within PP_0132at 139.480 kb on - strand, within PP_0132at 139.480 kb on - strand, within PP_0132at 139.480 kb on - strand, within PP_0132at 139.480 kb on - strand, within PP_0132at 139.949 kb on - strand, within PP_0132at 139.958 kb on + strand, within PP_0132at 139.959 kb on - strand, within PP_0132at 139.988 kb on + strand, within PP_0132at 139.989 kb on - strand, within PP_0132at 140.154 kb on + strand, within PP_0132at 140.155 kb on - strand, within PP_0132at 140.176 kb on - strand, within PP_0132at 140.389 kb on + strandat 140.389 kb on + strandat 140.390 kb on - strandat 140.390 kb on - strandat 140.390 kb on - strandat 140.390 kb on - strandat 140.503 kb on + strandat 140.510 kb on + strandat 140.511 kb on - strandat 140.511 kb on - strandat 140.511 kb on - strandat 140.511 kb on - strandat 140.511 kb on - strandat 140.511 kb on - strandat 140.528 kb on + strandat 140.535 kb on + strandat 140.535 kb on + strandat 140.605 kb on - strandat 140.632 kb on - strandat 140.644 kb on + strand, within PP_0133at 140.737 kb on + strand, within PP_0133at 140.738 kb on - strand, within PP_0133at 140.774 kb on + strand, within PP_0133at 140.829 kb on - strand, within PP_0133at 140.930 kb on + strand, within PP_0133at 141.000 kb on + strand, within PP_0133at 141.000 kb on + strand, within PP_0133at 141.001 kb on - strand, within PP_0133at 141.001 kb on - strand, within PP_0133at 141.004 kb on + strand, within PP_0133at 141.004 kb on + strand, within PP_0133at 141.004 kb on + strand, within PP_0133at 141.004 kb on + strand, within PP_0133at 141.004 kb on + strand, within PP_0133at 141.004 kb on + strand, within PP_0133at 141.005 kb on - strand, within PP_0133at 141.005 kb on - strand, within PP_0133at 141.005 kb on - strand, within PP_0133at 141.005 kb on - strand, within PP_0133at 141.005 kb on - strand, within PP_0133at 141.045 kb on - strand, within PP_0133at 141.045 kb on - strand, within PP_0133at 141.119 kb on - strand, within PP_0133at 141.199 kb on + strand, within PP_0133at 141.200 kb on - strand, within PP_0133at 141.200 kb on - strand, within PP_0133at 141.396 kb on + strand, within PP_0133at 141.396 kb on + strand, within PP_0133at 141.397 kb on - strand, within PP_0133at 141.427 kb on + strand, within PP_0133at 141.428 kb on - strand, within PP_0133

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Per-strain Table

Position Strand Gene LocusTag Fraction Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs
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137,799 + PP_0131 0.43 -0.2
137,912 - PP_0131 0.50 +0.2
137,992 - PP_0131 0.55 -0.4
138,175 + PP_0131 0.67 -0.2
138,175 + PP_0131 0.67 +1.5
138,176 - PP_0131 0.67 -0.2
138,176 - PP_0131 0.67 +0.6
138,176 - PP_0131 0.67 +0.1
138,196 + PP_0131 0.68 +1.8
138,196 + PP_0131 0.68 +0.6
138,196 + PP_0131 0.68 -0.3
138,197 - PP_0131 0.68 -1.3
138,197 - PP_0131 0.68 +0.0
138,197 - PP_0131 0.68 -0.5
138,198 + PP_0131 0.68 -1.1
138,198 + PP_0131 0.68 +0.1
138,198 + PP_0131 0.68 -2.3
138,198 + PP_0131 0.68 +1.6
138,198 + PP_0131 0.68 -0.2
138,198 + PP_0131 0.68 -0.6
138,198 + PP_0131 0.68 +0.3
138,198 + PP_0131 0.68 +0.7
138,198 + PP_0131 0.68 +0.7
138,198 + PP_0131 0.68 -0.5
138,198 + PP_0131 0.68 -0.7
138,198 + PP_0131 0.68 -0.6
138,199 - PP_0131 0.68 +0.5
138,199 - PP_0131 0.68 +1.6
138,199 - PP_0131 0.68 -0.3
138,199 - PP_0131 0.68 -0.3
138,199 - PP_0131 0.68 -1.1
138,199 - PP_0131 0.68 +0.4
138,199 - PP_0131 0.68 -0.7
138,199 - PP_0131 0.68 -0.0
138,199 - PP_0131 0.68 +1.0
138,199 - PP_0131 0.68 +1.3
138,199 - PP_0131 0.68 +0.7
138,202 + PP_0131 0.69 -0.7
138,202 + PP_0131 0.69 -0.3
138,203 - PP_0131 0.69 +0.0
138,243 - PP_0131 0.71 -0.4
138,243 - PP_0131 0.71 -0.7
138,243 - PP_0131 0.71 +0.6
138,243 - PP_0131 0.71 +0.7
138,243 - PP_0131 0.71 +0.9
138,243 - PP_0131 0.71 -1.8
138,365 - PP_0131 0.79 -0.1
138,365 - PP_0131 0.79 +0.6
138,365 - -1.0
138,411 + PP_0131 0.82 -0.2
138,412 - PP_0131 0.82 -0.5
138,426 + PP_0131 0.82 -0.2
138,521 + PP_0131 0.88 +0.9
138,522 - PP_0131 0.88 -0.5
138,522 - PP_0131 0.88 -0.3
138,618 + -0.2
138,618 + +0.8
138,618 + -0.3
138,619 - +1.0
138,619 - +0.6
138,706 - +0.9
138,741 + +0.8
138,742 - +1.1
138,855 - +0.7
138,855 - +0.8
138,894 + +0.1
138,985 + PP_0132 0.15 -1.1
139,228 + PP_0132 0.28 +1.0
139,229 - PP_0132 0.28 +0.8
139,479 + PP_0132 0.42 -0.6
139,480 - PP_0132 0.43 +0.5
139,480 - PP_0132 0.43 +0.8
139,480 - PP_0132 0.43 +1.2
139,480 - PP_0132 0.43 +0.6
139,949 - PP_0132 0.69 +0.3
139,958 + PP_0132 0.69 +0.9
139,959 - PP_0132 0.69 +1.1
139,988 + PP_0132 0.71 +0.9
139,989 - PP_0132 0.71 +0.6
140,154 + PP_0132 0.80 -0.5
140,155 - PP_0132 0.80 +4.7
140,176 - PP_0132 0.82 +0.1
140,389 + +0.2
140,389 + +0.8
140,390 - +1.7
140,390 - +0.3
140,390 - +0.6
140,390 - +1.4
140,503 + +1.0
140,510 + +0.6
140,511 - +0.8
140,511 - +0.2
140,511 - +1.3
140,511 - +0.9
140,511 - +1.6
140,511 - +0.4
140,528 + +1.0
140,535 + +1.4
140,535 + +0.7
140,605 - +0.8
140,632 - +0.8
140,644 + PP_0133 0.11 +0.5
140,737 + PP_0133 0.18 +0.7
140,738 - PP_0133 0.18 +0.6
140,774 + PP_0133 0.20 +1.1
140,829 - PP_0133 0.24 +1.3
140,930 + PP_0133 0.32 -0.2
141,000 + PP_0133 0.37 +1.2
141,000 + PP_0133 0.37 +0.9
141,001 - PP_0133 0.37 +0.2
141,001 - PP_0133 0.37 +1.0
141,004 + PP_0133 0.37 +0.8
141,004 + PP_0133 0.37 +0.8
141,004 + PP_0133 0.37 +0.1
141,004 + PP_0133 0.37 +1.8
141,004 + PP_0133 0.37 +1.0
141,004 + PP_0133 0.37 +0.4
141,005 - PP_0133 0.37 +1.2
141,005 - PP_0133 0.37 +1.3
141,005 - PP_0133 0.37 -0.4
141,005 - PP_0133 0.37 +0.6
141,005 - PP_0133 0.37 +0.7
141,045 - PP_0133 0.40 +1.3
141,045 - PP_0133 0.40 +0.6
141,119 - PP_0133 0.46 +0.5
141,199 + PP_0133 0.52 +1.5
141,200 - PP_0133 0.52 +1.9
141,200 - PP_0133 0.52 +0.1
141,396 + PP_0133 0.67 -1.1
141,396 + PP_0133 0.67 +0.7
141,397 - PP_0133 0.67 +1.6
141,427 + PP_0133 0.69 -1.3
141,428 - PP_0133 0.69 +1.1

Or see this region's nucleotide sequence