Experiment: Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0574 and PP_0575 are separated by 118 nucleotides PP_0575 and PP_0576 are separated by 305 nucleotides PP_0576 and PP_0577 are separated by 19 nucleotides PP_0577 and PP_0578 overlap by 38 nucleotides
PP_0574: PP_0574 - DNA-binding response regulator, LuxR family, at 672,743 to 673,519
_0574
PP_0575: PP_0575 - conserved membrane protein of unknown function, at 673,638 to 674,108
_0575
PP_0576: PP_0576 - putative Lipoprotein, at 674,414 to 674,983
_0576
PP_0577: PP_0577 - conserved protein of unknown function, at 675,003 to 675,698
_0577
PP_0578: PP_0578 - putative Methyltransferase, at 675,661 to 676,410
_0578
Position (kb) 674
675 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 673.425 kb on + strand, within PP_0574 at 673.425 kb on + strand, within PP_0574 at 673.425 kb on + strand, within PP_0574 at 673.425 kb on + strand, within PP_0574 at 673.425 kb on + strand, within PP_0574 at 673.426 kb on - strand, within PP_0574 at 673.426 kb on - strand, within PP_0574 at 673.426 kb on - strand at 673.426 kb on - strand, within PP_0574 at 673.426 kb on - strand, within PP_0574 at 673.496 kb on + strand at 673.496 kb on + strand at 673.497 kb on - strand at 673.497 kb on - strand at 673.537 kb on + strand at 673.538 kb on - strand at 673.539 kb on + strand at 673.574 kb on + strand at 673.574 kb on + strand at 673.575 kb on - strand at 673.580 kb on + strand at 673.581 kb on - strand at 673.597 kb on + strand at 673.597 kb on + strand at 673.597 kb on + strand at 673.598 kb on - strand at 673.598 kb on - strand at 673.598 kb on - strand at 673.601 kb on + strand at 673.601 kb on + strand at 673.601 kb on + strand at 673.601 kb on + strand at 673.601 kb on + strand at 673.601 kb on + strand at 673.601 kb on + strand at 673.602 kb on - strand at 673.602 kb on - strand at 673.602 kb on - strand at 673.612 kb on + strand at 673.612 kb on + strand at 673.612 kb on + strand at 673.613 kb on - strand at 673.613 kb on - strand at 673.613 kb on - strand at 673.674 kb on + strand at 673.681 kb on + strand at 673.740 kb on + strand, within PP_0575 at 673.741 kb on - strand, within PP_0575 at 673.795 kb on - strand, within PP_0575 at 673.831 kb on + strand, within PP_0575 at 673.831 kb on + strand, within PP_0575 at 673.832 kb on - strand, within PP_0575 at 673.832 kb on - strand, within PP_0575 at 673.903 kb on + strand, within PP_0575 at 673.904 kb on - strand, within PP_0575 at 673.904 kb on - strand, within PP_0575 at 673.904 kb on - strand, within PP_0575 at 674.041 kb on - strand, within PP_0575 at 674.176 kb on - strand at 674.176 kb on - strand at 674.282 kb on + strand at 674.293 kb on + strand at 674.293 kb on + strand at 674.293 kb on + strand at 674.293 kb on + strand at 674.293 kb on + strand at 674.293 kb on + strand at 674.294 kb on - strand at 674.294 kb on - strand at 674.294 kb on - strand at 674.294 kb on - strand at 674.294 kb on - strand at 674.294 kb on - strand at 674.294 kb on - strand at 674.294 kb on - strand at 674.294 kb on - strand at 674.297 kb on + strand at 674.297 kb on + strand at 674.297 kb on + strand at 674.297 kb on + strand at 674.298 kb on - strand at 674.364 kb on + strand at 674.416 kb on - strand at 674.436 kb on + strand at 674.436 kb on + strand at 674.437 kb on - strand at 674.461 kb on + strand at 674.462 kb on - strand at 674.502 kb on + strand, within PP_0576 at 674.537 kb on + strand, within PP_0576 at 674.538 kb on - strand, within PP_0576 at 674.592 kb on + strand, within PP_0576 at 674.593 kb on - strand, within PP_0576 at 674.593 kb on - strand, within PP_0576 at 674.593 kb on - strand, within PP_0576 at 674.616 kb on + strand, within PP_0576 at 674.616 kb on + strand, within PP_0576 at 674.616 kb on + strand, within PP_0576 at 674.616 kb on + strand, within PP_0576 at 674.617 kb on - strand, within PP_0576 at 674.668 kb on - strand, within PP_0576 at 674.709 kb on + strand, within PP_0576 at 674.709 kb on + strand, within PP_0576 at 674.709 kb on + strand, within PP_0576 at 674.709 kb on + strand, within PP_0576 at 674.709 kb on + strand, within PP_0576 at 674.710 kb on - strand, within PP_0576 at 674.710 kb on - strand, within PP_0576 at 674.710 kb on - strand, within PP_0576 at 674.710 kb on - strand, within PP_0576 at 674.710 kb on - strand, within PP_0576 at 674.710 kb on - strand, within PP_0576 at 674.710 kb on - strand, within PP_0576 at 674.717 kb on + strand, within PP_0576 at 674.718 kb on - strand, within PP_0576 at 674.718 kb on - strand, within PP_0576 at 674.718 kb on - strand, within PP_0576 at 674.718 kb on - strand, within PP_0576 at 674.748 kb on - strand, within PP_0576 at 674.875 kb on + strand, within PP_0576 at 674.876 kb on - strand, within PP_0576 at 674.876 kb on - strand, within PP_0576 at 674.876 kb on - strand, within PP_0576 at 674.880 kb on + strand, within PP_0576 at 674.963 kb on + strand at 674.964 kb on - strand at 674.964 kb on - strand at 675.001 kb on + strand at 675.001 kb on + strand at 675.001 kb on + strand at 675.001 kb on + strand at 675.002 kb on - strand at 675.002 kb on - strand at 675.005 kb on - strand at 675.137 kb on - strand, within PP_0577 at 675.137 kb on - strand, within PP_0577 at 675.137 kb on - strand, within PP_0577 at 675.137 kb on - strand, within PP_0577 at 675.172 kb on + strand, within PP_0577 at 675.172 kb on + strand, within PP_0577 at 675.172 kb on + strand, within PP_0577 at 675.173 kb on - strand, within PP_0577 at 675.176 kb on + strand, within PP_0577 at 675.177 kb on - strand, within PP_0577 at 675.199 kb on + strand, within PP_0577 at 675.259 kb on + strand, within PP_0577 at 675.259 kb on + strand, within PP_0577 at 675.263 kb on - strand, within PP_0577 at 675.263 kb on - strand, within PP_0577 at 675.263 kb on - strand, within PP_0577 at 675.263 kb on - strand, within PP_0577 at 675.271 kb on + strand, within PP_0577 at 675.271 kb on + strand, within PP_0577 at 675.271 kb on + strand, within PP_0577 at 675.272 kb on - strand, within PP_0577 at 675.280 kb on + strand, within PP_0577 at 675.317 kb on + strand, within PP_0577 at 675.499 kb on + strand, within PP_0577 at 675.499 kb on + strand, within PP_0577 at 675.569 kb on - strand, within PP_0577 at 675.569 kb on - strand, within PP_0577 at 675.569 kb on - strand, within PP_0577 at 675.569 kb on - strand, within PP_0577 at 675.569 kb on - strand, within PP_0577 at 675.631 kb on + strand at 675.631 kb on + strand at 675.640 kb on + strand at 675.641 kb on - strand at 675.641 kb on - strand at 675.641 kb on - strand at 675.641 kb on - strand at 675.641 kb on - strand at 675.641 kb on - strand at 675.786 kb on + strand, within PP_0578 at 675.786 kb on + strand, within PP_0578 at 675.786 kb on + strand, within PP_0578 at 675.786 kb on + strand, within PP_0578 at 675.786 kb on + strand, within PP_0578 at 675.786 kb on + strand, within PP_0578 at 675.786 kb on + strand, within PP_0578 at 675.787 kb on - strand, within PP_0578 at 675.787 kb on - strand, within PP_0578 at 675.787 kb on - strand, within PP_0578 at 675.788 kb on + strand, within PP_0578 at 675.788 kb on + strand, within PP_0578 at 675.788 kb on + strand, within PP_0578 at 675.788 kb on + strand, within PP_0578 at 675.789 kb on - strand, within PP_0578 at 675.789 kb on - strand, within PP_0578 at 675.834 kb on + strand, within PP_0578 at 675.834 kb on + strand, within PP_0578 at 675.834 kb on + strand, within PP_0578 at 675.835 kb on - strand, within PP_0578 at 675.835 kb on - strand, within PP_0578 at 675.835 kb on - strand, within PP_0578 at 675.977 kb on + strand, within PP_0578 at 675.977 kb on + strand, within PP_0578
Per-strain Table
Position Strand Gene LocusTag Fraction Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs remove 673,425 + PP_0574 0.88 -3.5 673,425 + PP_0574 0.88 +0.5 673,425 + PP_0574 0.88 -0.8 673,425 + PP_0574 0.88 -1.8 673,425 + PP_0574 0.88 -2.0 673,426 - PP_0574 0.88 +0.0 673,426 - PP_0574 0.88 +0.0 673,426 - -1.0 673,426 - PP_0574 0.88 +0.8 673,426 - PP_0574 0.88 +0.1 673,496 + +1.4 673,496 + -1.5 673,497 - -2.4 673,497 - -0.3 673,537 + +2.2 673,538 - -1.0 673,539 + +0.8 673,574 + +0.2 673,574 + -2.3 673,575 - +0.2 673,580 + -2.4 673,581 - +0.4 673,597 + +0.0 673,597 + +0.1 673,597 + +0.3 673,598 - +0.3 673,598 - -0.6 673,598 - -1.7 673,601 + +0.1 673,601 + +1.5 673,601 + -0.3 673,601 + +1.2 673,601 + +0.0 673,601 + +0.7 673,601 + -1.3 673,602 - -0.3 673,602 - +1.0 673,602 - +0.1 673,612 + +1.3 673,612 + +0.7 673,612 + +1.5 673,613 - +1.3 673,613 - -3.4 673,613 - +1.8 673,674 + -1.5 673,681 + -0.5 673,740 + PP_0575 0.22 -0.7 673,741 - PP_0575 0.22 +0.3 673,795 - PP_0575 0.33 -3.1 673,831 + PP_0575 0.41 -0.4 673,831 + PP_0575 0.41 +0.1 673,832 - PP_0575 0.41 +0.2 673,832 - PP_0575 0.41 +0.4 673,903 + PP_0575 0.56 +0.8 673,904 - PP_0575 0.56 +2.0 673,904 - PP_0575 0.56 +0.4 673,904 - PP_0575 0.56 -3.4 674,041 - PP_0575 0.86 -2.5 674,176 - -0.4 674,176 - +1.6 674,282 + +1.1 674,293 + +0.2 674,293 + +0.0 674,293 + +0.3 674,293 + -0.5 674,293 + +0.1 674,293 + +1.2 674,294 - -2.8 674,294 - -3.1 674,294 - -0.3 674,294 - -0.5 674,294 - +0.8 674,294 - +0.8 674,294 - -0.1 674,294 - -2.9 674,294 - -1.8 674,297 + +0.2 674,297 + -3.4 674,297 + -0.9 674,297 + +0.3 674,298 - -1.1 674,364 + -1.5 674,416 - -3.8 674,436 + +0.0 674,436 + +2.1 674,437 - +0.3 674,461 + -0.1 674,462 - +0.1 674,502 + PP_0576 0.15 +1.3 674,537 + PP_0576 0.22 -1.0 674,538 - PP_0576 0.22 -2.7 674,592 + PP_0576 0.31 +0.9 674,593 - PP_0576 0.31 +0.3 674,593 - PP_0576 0.31 -4.1 674,593 - PP_0576 0.31 -2.6 674,616 + PP_0576 0.35 +1.4 674,616 + PP_0576 0.35 +1.8 674,616 + PP_0576 0.35 +0.5 674,616 + PP_0576 0.35 +0.0 674,617 - PP_0576 0.36 -1.4 674,668 - PP_0576 0.45 -0.5 674,709 + PP_0576 0.52 +0.4 674,709 + PP_0576 0.52 +2.7 674,709 + PP_0576 0.52 +1.2 674,709 + PP_0576 0.52 +1.6 674,709 + PP_0576 0.52 +1.3 674,710 - PP_0576 0.52 +1.0 674,710 - PP_0576 0.52 -1.9 674,710 - PP_0576 0.52 +1.3 674,710 - PP_0576 0.52 +0.3 674,710 - PP_0576 0.52 +1.3 674,710 - PP_0576 0.52 -0.5 674,710 - PP_0576 0.52 +1.2 674,717 + PP_0576 0.53 -2.6 674,718 - PP_0576 0.53 -3.2 674,718 - PP_0576 0.53 +1.0 674,718 - PP_0576 0.53 -2.9 674,718 - PP_0576 0.53 +1.9 674,748 - PP_0576 0.59 -0.1 674,875 + PP_0576 0.81 -1.1 674,876 - PP_0576 0.81 +0.3 674,876 - PP_0576 0.81 +0.6 674,876 - PP_0576 0.81 -1.0 674,880 + PP_0576 0.82 +0.7 674,963 + +0.0 674,964 - +0.6 674,964 - +1.0 675,001 + -3.4 675,001 + -1.5 675,001 + +0.1 675,001 + +1.1 675,002 - -4.3 675,002 - -0.5 675,005 - -3.1 675,137 - PP_0577 0.19 +0.7 675,137 - PP_0577 0.19 -3.5 675,137 - PP_0577 0.19 +0.0 675,137 - PP_0577 0.19 -3.8 675,172 + PP_0577 0.24 -2.3 675,172 + PP_0577 0.24 -0.5 675,172 + PP_0577 0.24 +0.7 675,173 - PP_0577 0.24 +0.0 675,176 + PP_0577 0.25 -0.5 675,177 - PP_0577 0.25 -0.2 675,199 + PP_0577 0.28 +1.0 675,259 + PP_0577 0.37 -0.8 675,259 + PP_0577 0.37 -3.5 675,263 - PP_0577 0.37 -1.0 675,263 - PP_0577 0.37 +0.2 675,263 - PP_0577 0.37 +1.7 675,263 - PP_0577 0.37 -3.6 675,271 + PP_0577 0.39 -0.8 675,271 + PP_0577 0.39 +1.3 675,271 + PP_0577 0.39 -0.6 675,272 - PP_0577 0.39 +1.3 675,280 + PP_0577 0.40 +0.6 675,317 + PP_0577 0.45 -1.6 675,499 + PP_0577 0.71 +0.7 675,499 + PP_0577 0.71 +0.2 675,569 - PP_0577 0.81 -2.8 675,569 - PP_0577 0.81 +0.8 675,569 - PP_0577 0.81 -1.5 675,569 - PP_0577 0.81 -2.4 675,569 - PP_0577 0.81 +0.1 675,631 + -1.6 675,631 + -0.1 675,640 + +1.7 675,641 - +1.6 675,641 - +2.4 675,641 - -1.2 675,641 - +0.5 675,641 - -0.1 675,641 - -0.7 675,786 + PP_0578 0.17 -2.7 675,786 + PP_0578 0.17 -3.3 675,786 + PP_0578 0.17 +0.1 675,786 + PP_0578 0.17 +0.7 675,786 + PP_0578 0.17 -2.8 675,786 + PP_0578 0.17 +1.2 675,786 + PP_0578 0.17 +0.6 675,787 - PP_0578 0.17 +3.0 675,787 - PP_0578 0.17 +1.5 675,787 - PP_0578 0.17 +1.3 675,788 + PP_0578 0.17 -0.3 675,788 + PP_0578 0.17 -1.8 675,788 + PP_0578 0.17 -1.1 675,788 + PP_0578 0.17 -0.0 675,789 - PP_0578 0.17 +1.5 675,789 - PP_0578 0.17 +0.5 675,834 + PP_0578 0.23 -0.0 675,834 + PP_0578 0.23 +0.7 675,834 + PP_0578 0.23 -0.6 675,835 - PP_0578 0.23 -2.2 675,835 - PP_0578 0.23 -1.7 675,835 - PP_0578 0.23 +0.3 675,977 + PP_0578 0.42 +0.5 675,977 + PP_0578 0.42 +0.1
Or see this region's nucleotide sequence