Strain Fitness in Pseudomonas putida KT2440 around PP_0280

Experiment: Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0279 and PP_0280 are separated by 128 nucleotidesPP_0280 and PP_0281 overlap by 1 nucleotidesPP_0281 and PP_0282 are separated by 54 nucleotides PP_0279: PP_0279 - conserved protein of unknown function, at 336,545 to 337,750 _0279 PP_0280: PP_0280 - Amino acid ABC transporter, permease protein, at 337,879 to 338,568 _0280 PP_0281: PP_0281 - Amino acid ABC transporter, permease protein, at 338,568 to 339,260 _0281 PP_0282: PP_0282 - L-arginine ABC transporter - periplasmic binding subunit, at 339,315 to 340,067 _0282 Position (kb) 337 338 339Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 337.047 kb on + strand, within PP_0279at 337.071 kb on + strand, within PP_0279at 337.072 kb on - strand, within PP_0279at 337.072 kb on - strand, within PP_0279at 337.133 kb on + strand, within PP_0279at 337.133 kb on + strand, within PP_0279at 337.134 kb on - strand, within PP_0279at 337.134 kb on - strand, within PP_0279at 337.175 kb on - strand, within PP_0279at 337.290 kb on + strand, within PP_0279at 337.290 kb on + strand, within PP_0279at 337.291 kb on - strand, within PP_0279at 337.291 kb on - strand, within PP_0279at 337.721 kb on + strandat 337.721 kb on + strandat 337.721 kb on + strandat 337.721 kb on + strandat 337.721 kb on + strandat 337.721 kb on + strandat 337.721 kb on + strandat 337.721 kb on + strandat 337.722 kb on - strandat 337.722 kb on - strandat 337.722 kb on - strandat 337.722 kb on - strandat 337.808 kb on + strandat 337.809 kb on - strandat 337.809 kb on - strandat 337.810 kb on + strandat 337.811 kb on - strandat 337.811 kb on - strandat 337.834 kb on + strandat 337.835 kb on - strandat 337.961 kb on + strand, within PP_0280at 337.961 kb on + strand, within PP_0280at 337.962 kb on - strand, within PP_0280at 337.962 kb on - strand, within PP_0280at 338.000 kb on + strand, within PP_0280at 338.001 kb on - strand, within PP_0280at 338.020 kb on - strand, within PP_0280at 338.056 kb on - strand, within PP_0280at 338.144 kb on + strand, within PP_0280at 338.144 kb on + strand, within PP_0280at 338.202 kb on + strand, within PP_0280at 338.202 kb on + strand, within PP_0280at 338.243 kb on + strand, within PP_0280at 338.243 kb on + strand, within PP_0280at 338.244 kb on - strand, within PP_0280at 338.244 kb on - strand, within PP_0280at 338.300 kb on + strand, within PP_0280at 338.351 kb on + strand, within PP_0280at 338.402 kb on + strand, within PP_0280at 338.402 kb on + strand, within PP_0280at 338.426 kb on + strand, within PP_0280at 338.569 kb on + strandat 338.570 kb on - strandat 338.570 kb on - strandat 338.570 kb on - strandat 338.619 kb on - strandat 338.650 kb on + strand, within PP_0281at 338.651 kb on - strand, within PP_0281at 338.651 kb on - strand, within PP_0281at 338.651 kb on - strand, within PP_0281at 338.651 kb on - strand, within PP_0281at 338.671 kb on + strand, within PP_0281at 338.671 kb on + strand, within PP_0281at 338.672 kb on - strand, within PP_0281at 338.672 kb on - strand, within PP_0281at 338.672 kb on - strand, within PP_0281at 338.906 kb on + strand, within PP_0281at 339.046 kb on + strand, within PP_0281at 339.046 kb on + strand, within PP_0281at 339.047 kb on - strand, within PP_0281at 339.047 kb on - strand, within PP_0281at 339.047 kb on - strand, within PP_0281at 339.050 kb on + strand, within PP_0281at 339.050 kb on + strand, within PP_0281at 339.050 kb on + strand, within PP_0281at 339.051 kb on - strand, within PP_0281at 339.051 kb on - strand, within PP_0281at 339.051 kb on - strand, within PP_0281at 339.051 kb on - strand, within PP_0281at 339.051 kb on - strand, within PP_0281at 339.051 kb on - strand, within PP_0281at 339.051 kb on - strand, within PP_0281at 339.058 kb on - strand, within PP_0281at 339.058 kb on - strand, within PP_0281at 339.097 kb on + strand, within PP_0281at 339.255 kb on - strandat 339.337 kb on + strandat 339.337 kb on + strandat 339.337 kb on + strandat 339.337 kb on + strandat 339.338 kb on - strandat 339.338 kb on - strandat 339.358 kb on + strandat 339.358 kb on + strandat 339.358 kb on + strandat 339.358 kb on + strandat 339.359 kb on - strandat 339.362 kb on + strandat 339.363 kb on - strandat 339.514 kb on + strand, within PP_0282at 339.514 kb on + strand, within PP_0282at 339.515 kb on - strand, within PP_0282at 339.523 kb on + strand, within PP_0282at 339.523 kb on + strand, within PP_0282at 339.523 kb on + strand, within PP_0282at 339.524 kb on - strand, within PP_0282at 339.524 kb on - strand, within PP_0282at 339.524 kb on - strand, within PP_0282at 339.524 kb on - strand, within PP_0282at 339.524 kb on - strand, within PP_0282at 339.548 kb on + strand, within PP_0282

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Per-strain Table

Position Strand Gene LocusTag Fraction Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs
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337,047 + PP_0279 0.42 -3.2
337,071 + PP_0279 0.44 -0.1
337,072 - PP_0279 0.44 +0.1
337,072 - PP_0279 0.44 -0.8
337,133 + PP_0279 0.49 -2.6
337,133 + PP_0279 0.49 -3.8
337,134 - PP_0279 0.49 +0.4
337,134 - PP_0279 0.49 -2.5
337,175 - PP_0279 0.52 +0.6
337,290 + PP_0279 0.62 -4.0
337,290 + PP_0279 0.62 -0.4
337,291 - PP_0279 0.62 -0.2
337,291 - PP_0279 0.62 -3.0
337,721 + +1.6
337,721 + -4.0
337,721 + +0.5
337,721 + -4.2
337,721 + -4.6
337,721 + +0.4
337,721 + +0.5
337,721 + +0.3
337,722 - -0.2
337,722 - -1.1
337,722 - +0.3
337,722 - +0.7
337,808 + -0.5
337,809 - -0.0
337,809 - +2.2
337,810 + -3.0
337,811 - -1.7
337,811 - -2.8
337,834 + +0.7
337,835 - -0.4
337,961 + PP_0280 0.12 -2.3
337,961 + PP_0280 0.12 +2.3
337,962 - PP_0280 0.12 -2.4
337,962 - PP_0280 0.12 -2.5
338,000 + PP_0280 0.18 +0.3
338,001 - PP_0280 0.18 +2.8
338,020 - PP_0280 0.20 -1.3
338,056 - PP_0280 0.26 -2.2
338,144 + PP_0280 0.38 +1.3
338,144 + PP_0280 0.38 -2.5
338,202 + PP_0280 0.47 -2.9
338,202 + PP_0280 0.47 +0.9
338,243 + PP_0280 0.53 -3.0
338,243 + PP_0280 0.53 +1.3
338,244 - PP_0280 0.53 +0.5
338,244 - PP_0280 0.53 -0.2
338,300 + PP_0280 0.61 +0.3
338,351 + PP_0280 0.68 +1.8
338,402 + PP_0280 0.76 +0.1
338,402 + PP_0280 0.76 -2.8
338,426 + PP_0280 0.79 +3.8
338,569 + +0.8
338,570 - -3.1
338,570 - -3.7
338,570 - +0.6
338,619 - +0.1
338,650 + PP_0281 0.12 -2.0
338,651 - PP_0281 0.12 -1.0
338,651 - PP_0281 0.12 -2.7
338,651 - PP_0281 0.12 +0.9
338,651 - PP_0281 0.12 -3.5
338,671 + PP_0281 0.15 -3.8
338,671 + PP_0281 0.15 -2.9
338,672 - PP_0281 0.15 -0.8
338,672 - PP_0281 0.15 -3.3
338,672 - PP_0281 0.15 -2.1
338,906 + PP_0281 0.49 +0.3
339,046 + PP_0281 0.69 -1.8
339,046 + PP_0281 0.69 +0.7
339,047 - PP_0281 0.69 -0.0
339,047 - PP_0281 0.69 +1.5
339,047 - PP_0281 0.69 -0.4
339,050 + PP_0281 0.70 -3.3
339,050 + PP_0281 0.70 -0.8
339,050 + PP_0281 0.70 -2.0
339,051 - PP_0281 0.70 -1.4
339,051 - PP_0281 0.70 -2.6
339,051 - PP_0281 0.70 -0.0
339,051 - PP_0281 0.70 -3.6
339,051 - PP_0281 0.70 +0.8
339,051 - PP_0281 0.70 -1.8
339,051 - PP_0281 0.70 +2.1
339,058 - PP_0281 0.71 -0.7
339,058 - PP_0281 0.71 +1.0
339,097 + PP_0281 0.76 -0.6
339,255 - -2.8
339,337 + -2.3
339,337 + +1.0
339,337 + +0.1
339,337 + +1.9
339,338 - +0.0
339,338 - +0.8
339,358 + +0.0
339,358 + +1.5
339,358 + +2.1
339,358 + +1.3
339,359 - +0.9
339,362 + -1.7
339,363 - +1.0
339,514 + PP_0282 0.26 +0.2
339,514 + PP_0282 0.26 +0.5
339,515 - PP_0282 0.27 -0.4
339,523 + PP_0282 0.28 +1.8
339,523 + PP_0282 0.28 -3.4
339,523 + PP_0282 0.28 -0.6
339,524 - PP_0282 0.28 -2.5
339,524 - PP_0282 0.28 +0.4
339,524 - PP_0282 0.28 +1.4
339,524 - PP_0282 0.28 -1.5
339,524 - PP_0282 0.28 +0.4
339,548 + PP_0282 0.31 +0.5

Or see this region's nucleotide sequence