Strain Fitness in Pseudomonas putida KT2440 around PP_0252

Experiment: Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0250 and PP_0251 are separated by 28 nucleotidesPP_0251 and PP_0252 are separated by 120 nucleotides PP_0250: PP_0250 - heat shock protein Hsp15 involved in ribosome recycling, at 304,741 to 305,142 _0250 PP_0251: PP_0251 - conserved membrane protein of unknown function, at 305,171 to 305,965 _0251 PP_0252: PP_0252 - 33 kDa chaperonin, at 306,086 to 306,985 _0252 Position (kb) 306 307Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 305.204 kb on + strandat 305.284 kb on - strand, within PP_0251at 305.284 kb on - strand, within PP_0251at 305.284 kb on - strand, within PP_0251at 305.304 kb on - strand, within PP_0251at 305.328 kb on + strand, within PP_0251at 305.329 kb on - strand, within PP_0251at 305.406 kb on + strand, within PP_0251at 305.406 kb on + strand, within PP_0251at 305.407 kb on - strand, within PP_0251at 305.407 kb on - strand, within PP_0251at 305.407 kb on - strand, within PP_0251at 305.533 kb on - strand, within PP_0251at 305.535 kb on + strand, within PP_0251at 305.536 kb on - strand, within PP_0251at 305.536 kb on - strand, within PP_0251at 305.636 kb on + strand, within PP_0251at 305.636 kb on + strand, within PP_0251at 305.645 kb on + strand, within PP_0251at 305.645 kb on + strand, within PP_0251at 305.646 kb on - strand, within PP_0251at 305.759 kb on + strand, within PP_0251at 305.759 kb on + strand, within PP_0251at 305.760 kb on - strand, within PP_0251at 305.781 kb on + strand, within PP_0251at 305.781 kb on + strand, within PP_0251at 305.782 kb on - strand, within PP_0251at 305.874 kb on - strand, within PP_0251at 305.888 kb on + strandat 305.888 kb on + strandat 305.889 kb on - strandat 305.889 kb on - strandat 305.908 kb on + strandat 305.909 kb on - strandat 305.909 kb on - strandat 305.965 kb on + strandat 305.965 kb on + strandat 305.976 kb on + strandat 307.075 kb on + strandat 307.101 kb on + strandat 307.120 kb on - strandat 307.120 kb on - strandat 307.120 kb on - strandat 307.189 kb on + strandat 307.189 kb on + strandat 307.189 kb on + strandat 307.190 kb on - strandat 307.190 kb on - strandat 307.247 kb on + strandat 307.248 kb on - strandat 307.250 kb on + strandat 307.250 kb on + strandat 307.251 kb on - strandat 307.289 kb on + strandat 307.451 kb on - strandat 307.451 kb on - strandat 307.451 kb on - strandat 307.460 kb on + strandat 307.763 kb on + strandat 307.763 kb on + strandat 307.764 kb on - strandat 307.764 kb on - strandat 307.764 kb on - strandat 307.764 kb on - strandat 307.764 kb on - strandat 307.764 kb on - strandat 307.770 kb on + strandat 307.771 kb on - strandat 307.771 kb on - strandat 307.845 kb on + strandat 307.935 kb on + strandat 307.936 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs
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305,204 + -2.1
305,284 - PP_0251 0.14 +0.6
305,284 - PP_0251 0.14 -1.8
305,284 - PP_0251 0.14 -1.8
305,304 - PP_0251 0.17 +1.3
305,328 + PP_0251 0.20 +0.6
305,329 - PP_0251 0.20 +0.1
305,406 + PP_0251 0.30 -0.4
305,406 + PP_0251 0.30 -3.9
305,407 - PP_0251 0.30 -3.9
305,407 - PP_0251 0.30 -2.7
305,407 - PP_0251 0.30 -1.1
305,533 - PP_0251 0.46 +0.6
305,535 + PP_0251 0.46 -0.6
305,536 - PP_0251 0.46 +1.3
305,536 - PP_0251 0.46 +2.3
305,636 + PP_0251 0.58 -2.6
305,636 + PP_0251 0.58 -0.5
305,645 + PP_0251 0.60 -2.6
305,645 + PP_0251 0.60 -3.7
305,646 - PP_0251 0.60 +1.4
305,759 + PP_0251 0.74 -2.6
305,759 + PP_0251 0.74 +1.0
305,760 - PP_0251 0.74 +0.0
305,781 + PP_0251 0.77 -0.7
305,781 + PP_0251 0.77 -1.8
305,782 - PP_0251 0.77 +1.8
305,874 - PP_0251 0.88 -2.8
305,888 + -2.4
305,888 + -2.8
305,889 - -2.6
305,889 - -2.0
305,908 + -2.6
305,909 - +1.0
305,909 - +0.3
305,965 + -2.1
305,965 + -0.0
305,976 + +0.3
307,075 + -2.7
307,101 + +0.2
307,120 - -1.0
307,120 - +0.3
307,120 - -1.2
307,189 + +0.1
307,189 + +1.1
307,189 + -0.4
307,190 - -0.2
307,190 - -3.1
307,247 + -0.4
307,248 - +3.6
307,250 + -0.1
307,250 + -4.0
307,251 - -0.1
307,289 + -0.0
307,451 - -2.5
307,451 - +0.3
307,451 - -4.5
307,460 + +0.8
307,763 + +0.2
307,763 + +0.5
307,764 - +1.7
307,764 - -0.4
307,764 - -3.3
307,764 - +1.2
307,764 - -0.3
307,764 - -1.6
307,770 + +1.9
307,771 - -3.3
307,771 - -1.4
307,845 + +1.2
307,935 + -0.4
307,936 - +0.8

Or see this region's nucleotide sequence