Strain Fitness in Pseudomonas putida KT2440 around PP_4959

Experiment: Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs
5,648,080	+		PP_4956	0.75	-0.0
5,648,080	+		PP_4956	0.75	+0.0
5,648,081	-		PP_4956	0.75	+1.0
5,648,103	-		PP_4956	0.80	+0.2
5,648,103	-		PP_4956	0.80	-0.6
5,648,113	+		PP_4956	0.82	+0.7
5,648,114	-		PP_4956	0.82	+0.2
5,648,378	+		PP_4957	0.54	+0.3
5,648,379	-		PP_4957	0.55	+0.3
5,648,470	+		PP_4957	0.85	-0.1
5,648,471	-		PP_4957	0.86	+0.4
5,648,527	+				+0.4
5,648,528	-				+0.2
5,648,551	+				+0.0
5,648,551	+				+2.4
5,648,552	-				-1.2
5,648,560	+				+0.5
5,648,591	-		PP_4958	0.12	+0.1
5,648,591	-		PP_4958	0.12	+0.2
5,648,620	+		PP_4958	0.17	-1.3
5,648,620	+		PP_4958	0.17	+0.6
5,648,823	+		PP_4958	0.55	+0.3
5,648,823	+				+0.4
5,648,823	+		PP_4958	0.55	+0.9
5,648,823	+		PP_4958	0.55	+0.6
5,648,854	+		PP_4958	0.61	-0.1
5,648,855	-		PP_4958	0.61	+0.8
5,648,855	-		PP_4958	0.61	+0.4
5,648,855	-		PP_4958	0.61	-0.6
5,648,855	-		PP_4958	0.61	-0.5
5,648,878	+		PP_4958	0.65	+0.6
5,648,878	+		PP_4958	0.65	+0.8
5,648,878	+		PP_4958	0.65	+0.2
5,648,879	-		PP_4958	0.65	+0.1
5,648,879	-		PP_4958	0.65	-0.3
5,648,884	+		PP_4958	0.66	+0.3
5,648,884	+		PP_4958	0.66	-1.1
5,648,884	+		PP_4958	0.66	-0.5
5,648,885	-		PP_4958	0.66	+1.1
5,648,885	-		PP_4958	0.66	+0.7
5,648,885	-		PP_4958	0.66	+0.3
5,648,939	-		PP_4958	0.76	+0.7
5,649,010	+		PP_4958	0.90	-0.7
5,649,010	+		PP_4958	0.90	+0.6
5,649,010	+		PP_4958	0.90	+0.1
5,649,010	+		PP_4958	0.90	+3.7
5,649,010	+		PP_4958	0.90	+0.7
5,649,011	-		PP_4958	0.90	+0.0
5,649,011	-		PP_4958	0.90	-0.7
5,649,011	-		PP_4958	0.90	+0.0
5,649,015	+				-0.3
5,649,015	+				-0.1
5,649,015	+				+0.4
5,649,015	+				-0.0
5,649,015	+				-0.3
5,649,015	+				+0.6
5,649,016	-				-1.0
5,649,016	-				-0.4
5,649,016	-				-1.1
5,649,016	-				-0.3
5,649,016	-				+0.7
5,649,016	-				-0.2
5,649,019	-				+0.5
5,649,019	-				+2.0
5,649,019	-				-0.5
5,649,034	+				+0.1
5,649,059	+				+0.2
5,649,127	+				+0.5
5,649,151	+				+0.0
5,649,151	+				+1.0
5,649,152	-				+0.7
5,649,222	-				+0.9
5,649,222	-				+0.3
5,649,222	-				-0.4
5,649,222	-				+1.3
5,649,414	+		PP_4959	0.16	+0.8
5,649,415	-		PP_4959	0.16	+1.1
5,649,415	-		PP_4959	0.16	+0.9
5,649,415	-		PP_4959	0.16	+0.8
5,649,415	-		PP_4959	0.16	+0.7
5,649,415	-		PP_4959	0.16	-0.1
5,649,441	-		PP_4959	0.18	+0.5
5,649,441	-		PP_4959	0.18	+0.7
5,649,441	-		PP_4959	0.18	-0.4
5,649,441	-		PP_4959	0.18	+0.2
5,649,442	+		PP_4959	0.18	+0.3
5,649,442	+		PP_4959	0.18	+0.5
5,649,443	-		PP_4959	0.18	+0.9
5,649,443	-		PP_4959	0.18	+0.4
5,649,443	-		PP_4959	0.18	-0.4
5,649,443	-		PP_4959	0.18	+0.2
5,649,443	-		PP_4959	0.18	+0.6
5,649,443	-		PP_4959	0.18	+1.0
5,649,443	-		PP_4959	0.18	+0.6
5,649,443	-		PP_4959	0.18	+0.3
5,649,598	+		PP_4959	0.25	+1.0
5,649,599	-		PP_4959	0.25	-0.2
5,649,784	+		PP_4959	0.34	+0.3
5,649,785	-		PP_4959	0.34	-0.2
5,649,794	+		PP_4959	0.34	-0.5
5,649,794	+		PP_4959	0.34	+1.0
5,649,794	+		PP_4959	0.34	+0.9
5,649,877	+		PP_4959	0.38	+0.7
5,649,916	+		PP_4959	0.40	+0.9
5,649,917	-		PP_4959	0.40	-0.4
5,649,974	-		PP_4959	0.43	+1.0
5,650,020	+		PP_4959	0.45	+0.8
5,650,021	-				-0.1
5,650,252	+		PP_4959	0.56	+0.5
5,650,252	+		PP_4959	0.56	+0.1
5,650,252	+		PP_4959	0.56	+0.2
5,650,252	+		PP_4959	0.56	+0.2
5,650,252	+		PP_4959	0.56	+0.9
5,650,252	+		PP_4959	0.56	-0.3
5,650,253	-		PP_4959	0.56	+0.7
5,650,253	-		PP_4959	0.56	+0.5
5,650,253	-		PP_4959	0.56	-0.2
5,650,253	-		PP_4959	0.56	+1.2
5,650,355	+		PP_4959	0.61	+1.5
5,650,356	-		PP_4959	0.61	+1.4
5,650,356	-		PP_4959	0.61	+1.0
5,650,389	-		PP_4959	0.62	+0.6
5,650,510	-		PP_4959	0.68	+0.7
5,650,534	+		PP_4959	0.69	+0.2
5,650,544	-		PP_4959	0.69	-0.0
5,650,544	-		PP_4959	0.69	+0.7
5,650,849	+		PP_4959	0.84	+0.8
5,650,849	+		PP_4959	0.84	-0.2
5,650,849	+				+3.0
5,650,850	-		PP_4959	0.84	+0.1
5,650,870	+		PP_4959	0.85	-0.1
5,650,995	+				-0.6
5,650,995	+				-0.0
5,650,995	+				+0.8
5,650,995	+				+0.6
5,650,995	+				+0.9
5,650,995	+				+0.8
5,650,995	+				+0.1
5,650,995	+				-0.2
5,650,996	-				+1.2
5,650,996	-				+0.7
5,650,996	-				+0.3
5,650,996	-				-0.3
5,650,996	-				+0.3
5,650,996	-				+0.9
5,650,996	-				+0.5
5,650,996	-				+0.1
5,650,996	-				+0.8
5,651,050	-				+0.7
5,651,050	-				+0.4
5,651,070	+				+0.4
5,651,070	+				+0.4
5,651,070	+				+0.8
5,651,070	+				+0.4
5,651,071	-				-0.3
5,651,071	-				-0.0
5,651,180	-				+0.2
5,651,206	+				-0.0
5,651,206	+				+1.0
5,651,206	+				+1.0
5,651,206	+				+0.1
5,651,206	+				+0.2
5,651,207	-				+0.2
5,651,207	-				-0.8
5,651,240	+				+1.2
5,651,241	-				-1.0
5,651,243	+				+0.1
5,651,243	+				+0.5
5,651,249	-				-1.6
5,651,249	-				-2.4
5,651,249	-				-2.6
5,651,249	-				-2.5
5,651,303	+				-0.7
5,651,304	-				-1.3
5,651,337	+				-0.2
5,651,395	+				-0.2