Strain Fitness in Pseudomonas putida KT2440 around PP_4166

Experiment: Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_4164 and PP_4165 overlap by 4 nucleotidesPP_4165 and PP_4166 are separated by 17 nucleotidesPP_4166 and PP_4167 are separated by 162 nucleotidesPP_4167 and PP_4168 overlap by 4 nucleotides PP_4164: PP_4164 - Alpha/beta hydrolase, at 4,707,408 to 4,708,262 _4164 PP_4165: PP_4165 - conserved protein of unknown function, at 4,708,259 to 4,709,122 _4165 PP_4166: PP_4166 - conserved protein of unknown function, at 4,709,140 to 4,709,514 _4166 PP_4167: PP_4167 - Phosphohistidine phosphatase SixA, at 4,709,677 to 4,710,135 _4167 PP_4168: PP_4168 - conserved protein of unknown function, at 4,710,132 to 4,710,479 _4168 Position (kb) 4709 4710Strain fitness (log2 ratio) -2 -1 0 1 2at 4708.220 kb on + strandat 4708.347 kb on - strand, within PP_4165at 4708.357 kb on - strand, within PP_4165at 4708.357 kb on - strand, within PP_4165at 4708.372 kb on + strand, within PP_4165at 4708.372 kb on + strand, within PP_4165at 4708.491 kb on + strand, within PP_4165at 4708.492 kb on - strand, within PP_4165at 4708.563 kb on - strand, within PP_4165at 4708.566 kb on + strand, within PP_4165at 4708.566 kb on + strand, within PP_4165at 4708.566 kb on + strand, within PP_4165at 4708.566 kb on + strand, within PP_4165at 4708.566 kb on + strand, within PP_4165at 4708.567 kb on - strand, within PP_4165at 4708.620 kb on + strand, within PP_4165at 4708.783 kb on - strand, within PP_4165at 4708.962 kb on + strand, within PP_4165at 4708.963 kb on - strand, within PP_4165at 4708.995 kb on + strand, within PP_4165at 4708.995 kb on + strand, within PP_4165at 4708.996 kb on - strand, within PP_4165at 4709.113 kb on + strandat 4709.113 kb on + strandat 4709.193 kb on - strand, within PP_4166at 4709.240 kb on + strand, within PP_4166at 4709.240 kb on + strand, within PP_4166at 4709.320 kb on - strand, within PP_4166at 4709.397 kb on - strand, within PP_4166at 4709.433 kb on - strand, within PP_4166at 4709.455 kb on - strand, within PP_4166at 4709.561 kb on + strandat 4709.619 kb on + strandat 4709.811 kb on + strand, within PP_4167at 4709.812 kb on - strand, within PP_4167at 4709.812 kb on - strand, within PP_4167at 4709.815 kb on + strand, within PP_4167at 4709.815 kb on + strand, within PP_4167at 4709.815 kb on + strand, within PP_4167at 4709.815 kb on + strand, within PP_4167at 4709.816 kb on - strand, within PP_4167at 4709.816 kb on - strand, within PP_4167at 4709.816 kb on - strand, within PP_4167at 4709.816 kb on - strand, within PP_4167at 4709.980 kb on + strand, within PP_4167at 4709.980 kb on + strand, within PP_4167at 4709.981 kb on - strand, within PP_4167at 4709.984 kb on + strand, within PP_4167at 4709.985 kb on - strand, within PP_4167at 4709.985 kb on - strand, within PP_4167at 4709.985 kb on - strand, within PP_4167at 4710.337 kb on + strand, within PP_4168at 4710.338 kb on - strand, within PP_4168at 4710.338 kb on - strand, within PP_4168at 4710.360 kb on + strand, within PP_4168at 4710.360 kb on + strand, within PP_4168at 4710.361 kb on - strand, within PP_4168at 4710.471 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs
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4,708,220 + +0.6
4,708,347 - PP_4165 0.10 +0.2
4,708,357 - PP_4165 0.11 -1.4
4,708,357 - PP_4165 0.11 +0.1
4,708,372 + PP_4165 0.13 +0.1
4,708,372 + PP_4165 0.13 -0.2
4,708,491 + PP_4165 0.27 -0.3
4,708,492 - PP_4165 0.27 -0.4
4,708,563 - PP_4165 0.35 -1.4
4,708,566 + PP_4165 0.36 -0.9
4,708,566 + PP_4165 0.36 +1.1
4,708,566 + PP_4165 0.36 -1.9
4,708,566 + PP_4165 0.36 +0.7
4,708,566 + PP_4165 0.36 -0.6
4,708,567 - PP_4165 0.36 +1.4
4,708,620 + PP_4165 0.42 +1.8
4,708,783 - PP_4165 0.61 -0.1
4,708,962 + PP_4165 0.81 +1.0
4,708,963 - PP_4165 0.81 -1.0
4,708,995 + PP_4165 0.85 -1.1
4,708,995 + PP_4165 0.85 +0.7
4,708,996 - PP_4165 0.85 -1.0
4,709,113 + +0.9
4,709,113 + -0.4
4,709,193 - PP_4166 0.14 +0.9
4,709,240 + PP_4166 0.27 +0.3
4,709,240 + PP_4166 0.27 +0.5
4,709,320 - PP_4166 0.48 +1.1
4,709,397 - PP_4166 0.69 -0.5
4,709,433 - PP_4166 0.78 +0.5
4,709,455 - PP_4166 0.84 +0.7
4,709,561 + -1.4
4,709,619 + -0.1
4,709,811 + PP_4167 0.29 +1.3
4,709,812 - PP_4167 0.29 -2.2
4,709,812 - PP_4167 0.29 -0.3
4,709,815 + PP_4167 0.30 +0.3
4,709,815 + PP_4167 0.30 -0.7
4,709,815 + PP_4167 0.30 +0.3
4,709,815 + PP_4167 0.30 +0.0
4,709,816 - PP_4167 0.30 +0.1
4,709,816 - PP_4167 0.30 -1.0
4,709,816 - PP_4167 0.30 -0.3
4,709,816 - PP_4167 0.30 -0.8
4,709,980 + PP_4167 0.66 -0.8
4,709,980 + PP_4167 0.66 -0.1
4,709,981 - PP_4167 0.66 +0.1
4,709,984 + PP_4167 0.67 -0.3
4,709,985 - PP_4167 0.67 -0.6
4,709,985 - PP_4167 0.67 -0.3
4,709,985 - PP_4167 0.67 -0.4
4,710,337 + PP_4168 0.59 +0.4
4,710,338 - PP_4168 0.59 -0.3
4,710,338 - PP_4168 0.59 -1.1
4,710,360 + PP_4168 0.66 -0.3
4,710,360 + PP_4168 0.66 +0.4
4,710,361 - PP_4168 0.66 -0.5
4,710,471 - -0.4

Or see this region's nucleotide sequence