Strain Fitness in Pseudomonas putida KT2440 around PP_0938

Experiment: Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs
1,079,421	+		PP_0937	0.42	-1.5
1,079,602	-		PP_0937	0.55	-0.8
1,079,602	-		PP_0937	0.55	+0.9
1,079,778	-		PP_0937	0.67	-1.7
1,079,880	-		PP_0937	0.74	-0.9
1,080,057	+		PP_0937	0.86	-1.1
1,080,111	+		PP_0937	0.90	-0.6
1,080,229	-				-1.4
1,080,229	-				-1.5
1,080,229	-				+0.3
1,080,243	+				+0.6
1,080,243	+				-0.5
1,080,243	+				+0.3
1,080,243	+				+0.3
1,080,243	+				+0.7
1,080,244	-				+0.2
1,080,244	-				+0.0
1,080,404	+				-0.5
1,080,404	+				+1.2
1,080,404	+				+0.6
1,080,404	+				-1.3
1,080,404	+				+0.0
1,080,404	+				-1.2
1,080,405	-				+0.3
1,080,405	-				-1.5
1,080,405	-				+0.6
1,080,405	-				+2.0
1,080,405	-				+0.3
1,080,405	-				-1.0
1,080,405	-				+1.3
1,080,405	-				+0.6
1,080,423	-				+1.1
1,080,436	+				+0.1
1,080,436	+				+0.2
1,080,436	+				-0.5
1,080,436	+				+0.8
1,080,437	-				-0.3
1,080,437	-				-1.4
1,080,491	+				+0.8
1,080,491	+				-0.2
1,080,492	-				+0.2
1,080,889	+		PP_0938	0.14	+1.3
1,080,889	+		PP_0938	0.14	+0.2
1,080,889	+		PP_0938	0.14	+0.0
1,080,889	+		PP_0938	0.14	+1.2
1,080,889	+		PP_0938	0.14	-1.2
1,080,889	+		PP_0938	0.14	-1.8
1,080,889	+		PP_0938	0.14	+0.2
1,080,889	+		PP_0938	0.14	-1.4
1,080,889	+		PP_0938	0.14	+0.4
1,080,890	-		PP_0938	0.14	-0.2
1,080,890	-		PP_0938	0.14	-0.8
1,080,890	-		PP_0938	0.14	+1.0
1,080,890	-		PP_0938	0.14	-0.1
1,080,890	-		PP_0938	0.14	+0.1
1,080,890	-		PP_0938	0.14	+0.0
1,080,890	-		PP_0938	0.14	-0.2
1,080,890	-		PP_0938	0.14	+0.8
1,080,890	-		PP_0938	0.14	-0.5
1,080,890	-		PP_0938	0.14	+0.2
1,080,919	-		PP_0938	0.15	+0.2
1,080,990	+		PP_0938	0.17	+2.2
1,080,990	+		PP_0938	0.17	-0.2
1,080,991	-		PP_0938	0.17	+0.0
1,080,991	-		PP_0938	0.17	+0.2
1,080,991	-		PP_0938	0.17	+1.5
1,081,022	+		PP_0938	0.18	-0.7
1,081,022	+		PP_0938	0.18	+0.8
1,081,022	+		PP_0938	0.18	+1.0
1,081,022	+		PP_0938	0.18	+1.4
1,081,023	-		PP_0938	0.18	+1.3
1,081,023	-		PP_0938	0.18	+2.7
1,081,031	-		PP_0938	0.18	+0.3
1,081,031	-		PP_0938	0.18	+1.1
1,081,031	-		PP_0938	0.18	-1.1
1,081,031	-				+0.8
1,081,166	+		PP_0938	0.21	+0.0
1,081,199	-		PP_0938	0.22	+0.3
1,081,571	+		PP_0938	0.32	+1.3
1,081,572	-		PP_0938	0.32	+0.9
1,081,572	-				+0.3
1,081,585	+		PP_0938	0.32	+0.3
1,081,585	+		PP_0938	0.32	+0.3
1,081,585	+		PP_0938	0.32	+0.5
1,081,586	-		PP_0938	0.32	-0.2
1,081,586	-		PP_0938	0.32	+1.7
1,081,586	-		PP_0938	0.32	+2.6
1,081,781	-		PP_0938	0.38	-1.0
1,081,861	+		PP_0938	0.40	+0.8
1,081,861	+		PP_0938	0.40	+0.3
1,081,861	+		PP_0938	0.40	+0.0
1,081,861	+		PP_0938	0.40	+3.9
1,081,861	+		PP_0938	0.40	+2.7
1,081,862	-		PP_0938	0.40	+1.0
1,081,862	-		PP_0938	0.40	+1.8
1,081,903	+		PP_0938	0.41	+1.3
1,081,903	+		PP_0938	0.41	+1.5
1,081,903	+		PP_0938	0.41	+1.8
1,081,903	+		PP_0938	0.41	+2.7
1,081,904	-		PP_0938	0.41	-0.5
1,081,905	+		PP_0938	0.41	+1.1
1,081,905	+		PP_0938	0.41	+0.8
1,081,905	+		PP_0938	0.41	+1.6
1,081,906	-		PP_0938	0.41	-0.4
1,081,915	+		PP_0938	0.41	+0.6
1,081,915	+		PP_0938	0.41	+0.6
1,081,994	-		PP_0938	0.43	-0.5
1,081,994	-		PP_0938	0.43	+2.0
1,082,249	-		PP_0938	0.50	+0.5
1,082,570	+		PP_0938	0.58	+0.5
1,082,570	+		PP_0938	0.58	+0.9
1,082,890	+		PP_0938	0.67	+0.8
1,082,933	+		PP_0938	0.68	-0.5
1,082,933	+		PP_0938	0.68	-0.2
1,082,933	+		PP_0938	0.68	-0.8
1,082,934	-		PP_0938	0.68	+1.1
1,082,934	-		PP_0938	0.68	-1.5
1,083,208	-		PP_0938	0.75	+0.3
1,083,208	-		PP_0938	0.75	+0.0
1,083,394	+		PP_0938	0.80	-1.0
1,083,394	+		PP_0938	0.80	-0.7
1,083,395	-		PP_0938	0.80	+0.5
1,083,399	+		PP_0938	0.80	+0.2
1,083,400	-		PP_0938	0.80	-1.1
1,083,400	-		PP_0938	0.80	+1.6
1,083,450	+				+0.8
1,083,529	+		PP_0938	0.83	+0.9
1,083,529	+		PP_0938	0.83	-0.8
1,083,530	-		PP_0938	0.83	+0.3
1,083,826	+				+0.8
1,083,826	+				+1.3
1,083,827	-				+0.5
1,083,868	+				-1.5
1,083,889	-				+0.0
1,083,889	-				+0.2
1,084,128	+				-0.6
1,084,128	+				-0.8
1,084,128	+				-0.8
1,084,128	+				-1.1
1,084,128	+				-1.0
1,084,129	-				-1.7
1,084,129	-				-0.1
1,084,172	-				+0.5
1,084,172	-				-0.5
1,084,512	+				+1.0
1,084,582	-		PP_0939	0.48	-0.0
1,084,582	-		PP_0939	0.48	-0.4
1,084,613	+		PP_0939	0.51	+0.4
1,084,614	-		PP_0939	0.51	-1.8
1,084,648	-		PP_0939	0.55	-0.4
1,084,672	-		PP_0939	0.58	+0.3
1,084,672	-		PP_0939	0.58	+0.4
1,084,672	-		PP_0939	0.58	-0.7
1,084,724	+		PP_0939	0.64	-3.1
1,084,725	-		PP_0939	0.64	+0.8
1,084,791	+		PP_0939	0.72	-1.0
1,084,791	+		PP_0939	0.72	+0.5
1,084,909	+		PP_0939	0.86	-0.4
1,084,910	-		PP_0939	0.86	-0.1
1,085,015	+				-0.2
1,085,016	-				+0.1
1,085,029	+				-1.1
1,085,043	+				-0.6
1,085,044	-				-0.6
1,085,150	+				+0.4
1,085,151	-				+0.3