Strain Fitness in Pseudomonas putida KT2440 around PP_0802

Experiment: Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPP_0800 and PP_0801 overlap by 22 nucleotidesPP_0801 and PP_0802 are separated by 88 nucleotidesPP_0802 and PP_0803 are separated by 92 nucleotides PP_0800: PP_0800 - conserved protein of unknown function, at 919,720 to 920,472 _0800 PP_0801: PP_0801 - conserved exported protein of unknown function, at 920,451 to 920,762 _0801 PP_0802: PP_0802 - putative chemotaxis protein, at 920,851 to 921,750 _0802 PP_0803: PP_0803 - Protein secretion ABC efflux system, membrane fusion protein, at 921,843 to 923,027 _0803 Position (kb) 920 921 922Strain fitness (log2 ratio) -2 -1 0 1at 919.889 kb on + strand, within PP_0800at 919.890 kb on - strand, within PP_0800at 919.890 kb on - strand, within PP_0800at 920.156 kb on + strand, within PP_0800at 920.156 kb on + strand, within PP_0800at 920.156 kb on + strand, within PP_0800at 920.156 kb on + strand, within PP_0800at 920.156 kb on + strand, within PP_0800at 920.156 kb on + strand, within PP_0800at 920.157 kb on - strand, within PP_0800at 920.157 kb on - strand, within PP_0800at 920.157 kb on - strand, within PP_0800at 920.157 kb on - strand, within PP_0800at 920.335 kb on + strand, within PP_0800at 920.335 kb on + strand, within PP_0800at 920.407 kb on - strandat 920.428 kb on - strandat 920.440 kb on + strandat 920.440 kb on + strandat 920.440 kb on + strandat 920.440 kb on + strandat 920.441 kb on - strandat 920.441 kb on - strandat 920.507 kb on - strand, within PP_0801at 920.801 kb on - strandat 920.847 kb on + strandat 920.847 kb on + strandat 920.847 kb on + strandat 920.848 kb on - strandat 920.848 kb on - strandat 920.848 kb on - strandat 920.849 kb on + strandat 920.849 kb on + strandat 920.849 kb on + strandat 920.849 kb on + strandat 920.849 kb on + strandat 920.849 kb on + strandat 920.850 kb on - strandat 920.925 kb on + strandat 921.002 kb on + strand, within PP_0802at 921.002 kb on + strand, within PP_0802at 921.002 kb on + strand, within PP_0802at 921.002 kb on + strand, within PP_0802at 921.003 kb on - strand, within PP_0802at 921.237 kb on + strand, within PP_0802at 921.237 kb on + strand, within PP_0802at 921.319 kb on + strand, within PP_0802at 921.460 kb on + strand, within PP_0802at 921.461 kb on - strand, within PP_0802at 921.461 kb on - strand, within PP_0802at 921.601 kb on + strand, within PP_0802at 921.601 kb on + strand, within PP_0802at 921.602 kb on - strand, within PP_0802at 921.602 kb on - strand, within PP_0802at 922.021 kb on + strand, within PP_0803at 922.021 kb on + strand, within PP_0803at 922.068 kb on + strand, within PP_0803at 922.093 kb on + strand, within PP_0803at 922.094 kb on - strand, within PP_0803at 922.094 kb on - strand, within PP_0803at 922.096 kb on - strand, within PP_0803at 922.096 kb on - strand, within PP_0803at 922.103 kb on - strand, within PP_0803at 922.103 kb on - strand, within PP_0803at 922.108 kb on + strand, within PP_0803at 922.108 kb on + strand, within PP_0803at 922.109 kb on - strand, within PP_0803at 922.400 kb on - strand, within PP_0803at 922.588 kb on + strand, within PP_0803at 922.588 kb on + strand, within PP_0803at 922.589 kb on - strand, within PP_0803at 922.589 kb on - strand, within PP_0803at 922.706 kb on - strand, within PP_0803

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs
remove
919,889 + PP_0800 0.22 +1.1
919,890 - PP_0800 0.23 -1.1
919,890 - PP_0800 0.23 -0.6
920,156 + PP_0800 0.58 -0.1
920,156 + PP_0800 0.58 -0.8
920,156 + PP_0800 0.58 -0.3
920,156 + PP_0800 0.58 +0.1
920,156 + PP_0800 0.58 -0.6
920,156 + PP_0800 0.58 +0.7
920,157 - PP_0800 0.58 -0.2
920,157 - PP_0800 0.58 +0.1
920,157 - PP_0800 0.58 -0.2
920,157 - PP_0800 0.58 +0.4
920,335 + PP_0800 0.82 -0.1
920,335 + PP_0800 0.82 -1.1
920,407 - -0.5
920,428 - +0.5
920,440 + +0.3
920,440 + -0.9
920,440 + +0.1
920,440 + +0.0
920,441 - -2.1
920,441 - +0.1
920,507 - PP_0801 0.18 -0.3
920,801 - -0.4
920,847 + +0.7
920,847 + +1.3
920,847 + -0.0
920,848 - -0.2
920,848 - -0.6
920,848 - +0.5
920,849 + +0.2
920,849 + +0.0
920,849 + +0.3
920,849 + +0.3
920,849 + -0.4
920,849 + +0.8
920,850 - -0.0
920,925 + +0.7
921,002 + PP_0802 0.17 -0.3
921,002 + PP_0802 0.17 +0.2
921,002 + PP_0802 0.17 +0.4
921,002 + PP_0802 0.17 +0.1
921,003 - PP_0802 0.17 -0.1
921,237 + PP_0802 0.43 +0.4
921,237 + PP_0802 0.43 +0.3
921,319 + PP_0802 0.52 +1.1
921,460 + PP_0802 0.68 +0.4
921,461 - PP_0802 0.68 +1.3
921,461 - PP_0802 0.68 +0.3
921,601 + PP_0802 0.83 -0.6
921,601 + PP_0802 0.83 +1.3
921,602 - PP_0802 0.83 +0.3
921,602 - PP_0802 0.83 -0.2
922,021 + PP_0803 0.15 -0.4
922,021 + PP_0803 0.15 +0.3
922,068 + PP_0803 0.19 +0.0
922,093 + PP_0803 0.21 -0.5
922,094 - PP_0803 0.21 +0.4
922,094 - PP_0803 0.21 +0.1
922,096 - PP_0803 0.21 -0.3
922,096 - PP_0803 0.21 -0.3
922,103 - PP_0803 0.22 +0.0
922,103 - PP_0803 0.22 -0.4
922,108 + PP_0803 0.22 +0.8
922,108 + PP_0803 0.22 +0.7
922,109 - PP_0803 0.22 -0.3
922,400 - PP_0803 0.47 +0.6
922,588 + PP_0803 0.63 +0.4
922,588 + PP_0803 0.63 -0.1
922,589 - PP_0803 0.63 +0.1
922,589 - PP_0803 0.63 -0.5
922,706 - PP_0803 0.73 +1.1

Or see this region's nucleotide sequence