Experiment: Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_5456 and PP_0753 are separated by 145 nucleotides PP_0753 and PP_0754 are separated by 74 nucleotides PP_0754 and PP_0755 are separated by 67 nucleotides PP_0755 and PP_0756 are separated by 35 nucleotides
PP_5456: PP_5456 - conserved protein of unknown function, at 870,189 to 870,422
_5456
PP_0753: PP_0753 - putative Lipoprotein, at 870,568 to 871,152
_0753
PP_0754: PP_0754 - conserved protein of unknown function, at 871,227 to 871,538
_0754
PP_0755: PP_0755 - conserved protein of unknown function, at 871,606 to 871,854
_0755
PP_0756: PP_0756 - conserved protein of unknown function, at 871,890 to 873,161
_0756
Position (kb) 871
872 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 870.374 kb on - strand, within PP_5456 at 870.374 kb on - strand, within PP_5456 at 870.461 kb on - strand at 870.524 kb on + strand at 870.524 kb on + strand at 870.528 kb on + strand at 870.528 kb on + strand at 870.528 kb on + strand at 870.528 kb on + strand at 870.528 kb on + strand at 870.528 kb on + strand at 870.528 kb on + strand at 870.528 kb on + strand at 870.529 kb on - strand at 870.529 kb on - strand at 870.529 kb on - strand at 870.529 kb on - strand at 870.529 kb on - strand at 870.529 kb on - strand at 870.529 kb on - strand at 870.529 kb on - strand at 870.530 kb on + strand at 870.530 kb on + strand at 870.530 kb on + strand at 870.531 kb on - strand at 870.531 kb on - strand at 870.531 kb on - strand at 870.531 kb on - strand at 870.531 kb on - strand at 870.531 kb on - strand at 870.531 kb on - strand at 870.531 kb on - strand at 870.531 kb on - strand at 870.531 kb on - strand at 870.531 kb on - strand at 870.531 kb on - strand at 870.531 kb on - strand at 870.531 kb on - strand at 870.763 kb on + strand, within PP_0753 at 870.764 kb on - strand, within PP_0753 at 870.764 kb on - strand, within PP_0753 at 870.764 kb on - strand, within PP_0753 at 870.916 kb on + strand, within PP_0753 at 870.916 kb on + strand at 870.917 kb on - strand, within PP_0753 at 870.917 kb on - strand, within PP_0753 at 870.917 kb on - strand, within PP_0753 at 870.940 kb on + strand, within PP_0753 at 870.940 kb on + strand, within PP_0753 at 870.941 kb on - strand, within PP_0753 at 870.941 kb on - strand, within PP_0753 at 870.941 kb on - strand, within PP_0753 at 870.941 kb on - strand, within PP_0753 at 870.955 kb on - strand, within PP_0753 at 871.003 kb on + strand, within PP_0753 at 871.150 kb on + strand at 871.151 kb on - strand at 871.151 kb on - strand at 871.151 kb on - strand at 871.228 kb on + strand at 871.228 kb on + strand at 871.228 kb on + strand at 871.239 kb on + strand at 871.239 kb on + strand at 871.239 kb on + strand at 871.239 kb on + strand at 871.240 kb on - strand at 871.240 kb on - strand at 871.240 kb on - strand at 871.321 kb on + strand, within PP_0754 at 871.322 kb on - strand, within PP_0754 at 871.322 kb on - strand, within PP_0754 at 871.322 kb on - strand, within PP_0754 at 871.322 kb on - strand, within PP_0754 at 871.402 kb on + strand, within PP_0754 at 871.402 kb on + strand, within PP_0754 at 871.403 kb on - strand, within PP_0754 at 871.475 kb on + strand, within PP_0754 at 871.475 kb on + strand, within PP_0754 at 871.552 kb on + strand at 871.552 kb on + strand at 871.553 kb on - strand at 871.553 kb on - strand at 871.729 kb on + strand, within PP_0755 at 871.730 kb on - strand, within PP_0755 at 871.730 kb on - strand, within PP_0755 at 871.740 kb on - strand, within PP_0755 at 871.740 kb on - strand, within PP_0755 at 871.783 kb on + strand, within PP_0755 at 871.783 kb on + strand, within PP_0755 at 871.783 kb on + strand, within PP_0755 at 871.784 kb on - strand, within PP_0755 at 871.789 kb on + strand, within PP_0755 at 871.789 kb on + strand, within PP_0755 at 871.790 kb on - strand, within PP_0755
Per-strain Table
Position Strand Gene LocusTag Fraction Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs remove 870,374 - PP_5456 0.79 -2.9 870,374 - PP_5456 0.79 -1.3 870,461 - +0.7 870,524 + -0.1 870,524 + +0.8 870,528 + -0.3 870,528 + +0.4 870,528 + -0.4 870,528 + -0.6 870,528 + +0.9 870,528 + -1.0 870,528 + +0.2 870,528 + -0.2 870,529 - -0.0 870,529 - -1.2 870,529 - -0.1 870,529 - -0.6 870,529 - -0.1 870,529 - +0.5 870,529 - -0.0 870,529 - -0.9 870,530 + +0.7 870,530 + +0.2 870,530 + -2.2 870,531 - +1.6 870,531 - -0.4 870,531 - +0.2 870,531 - +0.9 870,531 - +0.4 870,531 - -1.0 870,531 - -0.4 870,531 - -0.2 870,531 - -0.5 870,531 - -0.5 870,531 - -1.4 870,531 - -0.2 870,531 - -0.6 870,531 - -0.4 870,763 + PP_0753 0.33 -1.1 870,764 - PP_0753 0.34 -1.6 870,764 - PP_0753 0.34 +0.2 870,764 - PP_0753 0.34 +0.2 870,916 + PP_0753 0.59 +0.3 870,916 + -0.7 870,917 - PP_0753 0.60 -1.5 870,917 - PP_0753 0.60 -0.1 870,917 - PP_0753 0.60 +0.2 870,940 + PP_0753 0.64 +0.2 870,940 + PP_0753 0.64 -1.1 870,941 - PP_0753 0.64 -0.2 870,941 - PP_0753 0.64 +0.2 870,941 - PP_0753 0.64 +0.2 870,941 - PP_0753 0.64 -1.0 870,955 - PP_0753 0.66 +0.1 871,003 + PP_0753 0.74 -1.0 871,150 + +1.2 871,151 - +1.0 871,151 - +0.2 871,151 - +0.9 871,228 + -0.6 871,228 + +0.1 871,228 + -1.7 871,239 + -0.3 871,239 + -0.1 871,239 + -1.1 871,239 + -1.6 871,240 - -0.9 871,240 - +0.3 871,240 - -1.1 871,321 + PP_0754 0.30 -0.3 871,322 - PP_0754 0.30 +0.9 871,322 - PP_0754 0.30 -0.6 871,322 - PP_0754 0.30 +0.9 871,322 - PP_0754 0.30 +0.7 871,402 + PP_0754 0.56 +2.0 871,402 + PP_0754 0.56 +0.6 871,403 - PP_0754 0.56 +0.4 871,475 + PP_0754 0.79 +0.2 871,475 + PP_0754 0.79 -0.7 871,552 + -1.2 871,552 + -0.1 871,553 - +0.5 871,553 - -0.0 871,729 + PP_0755 0.49 -0.5 871,730 - PP_0755 0.50 +0.1 871,730 - PP_0755 0.50 +0.1 871,740 - PP_0755 0.54 +0.7 871,740 - PP_0755 0.54 -1.0 871,783 + PP_0755 0.71 +0.9 871,783 + PP_0755 0.71 +0.8 871,783 + PP_0755 0.71 -0.5 871,784 - PP_0755 0.71 +0.1 871,789 + PP_0755 0.73 -0.1 871,789 + PP_0755 0.73 -0.3 871,790 - PP_0755 0.74 +0.5
Or see this region's nucleotide sequence