Experiment: Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_5252 and PP_5253 are separated by 199 nucleotides PP_5253 and PP_5254 are separated by 40 nucleotides PP_5254 and PP_5255 are separated by 87 nucleotides
PP_5252: PP_5252 - conserved exported protein of unknown function, at 5,995,049 to 5,997,031
_5252
PP_5253: PP_5253 - Arylesterase, at 5,997,231 to 5,998,049
_5253
PP_5254: PP_5254 - conserved protein of unknown function, at 5,998,090 to 5,998,428
_5254
PP_5255: PP_5255 - putative hydrolase, at 5,998,516 to 5,999,145
_5255
Position (kb) 5997
5998
5999 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5996.268 kb on + strand, within PP_5252 at 5996.269 kb on - strand, within PP_5252 at 5996.284 kb on + strand, within PP_5252 at 5996.284 kb on + strand, within PP_5252 at 5996.285 kb on - strand, within PP_5252 at 5996.308 kb on - strand, within PP_5252 at 5996.538 kb on + strand, within PP_5252 at 5996.538 kb on + strand, within PP_5252 at 5996.539 kb on - strand, within PP_5252 at 5996.579 kb on - strand, within PP_5252 at 5996.661 kb on + strand, within PP_5252 at 5996.661 kb on + strand, within PP_5252 at 5996.662 kb on - strand, within PP_5252 at 5997.187 kb on - strand at 5997.198 kb on - strand at 5997.233 kb on - strand at 5997.310 kb on + strand at 5997.310 kb on + strand at 5997.311 kb on - strand at 5997.311 kb on - strand at 5997.311 kb on - strand at 5997.311 kb on - strand at 5997.311 kb on - strand at 5997.738 kb on - strand, within PP_5253 at 5997.739 kb on + strand, within PP_5253 at 5997.740 kb on - strand, within PP_5253 at 5997.842 kb on - strand, within PP_5253 at 5997.842 kb on - strand, within PP_5253 at 5998.012 kb on + strand at 5998.012 kb on + strand at 5998.012 kb on + strand at 5998.050 kb on - strand at 5998.055 kb on + strand at 5998.056 kb on - strand at 5998.139 kb on + strand, within PP_5254 at 5998.139 kb on + strand, within PP_5254 at 5998.139 kb on + strand, within PP_5254 at 5998.139 kb on + strand, within PP_5254 at 5998.139 kb on + strand, within PP_5254 at 5998.140 kb on - strand, within PP_5254 at 5998.140 kb on - strand, within PP_5254 at 5998.140 kb on - strand, within PP_5254 at 5998.274 kb on + strand, within PP_5254 at 5998.274 kb on + strand, within PP_5254 at 5998.274 kb on + strand, within PP_5254 at 5998.357 kb on + strand, within PP_5254 at 5998.357 kb on + strand, within PP_5254 at 5998.358 kb on - strand, within PP_5254 at 5998.358 kb on - strand, within PP_5254 at 5998.358 kb on - strand, within PP_5254 at 5998.358 kb on - strand, within PP_5254 at 5998.358 kb on - strand, within PP_5254 at 5998.464 kb on - strand at 5998.464 kb on - strand at 5998.464 kb on - strand at 5998.464 kb on - strand at 5998.464 kb on - strand at 5998.518 kb on - strand at 5998.518 kb on - strand at 5998.541 kb on + strand at 5998.542 kb on - strand at 5998.786 kb on + strand, within PP_5255 at 5998.787 kb on - strand, within PP_5255 at 5998.788 kb on - strand, within PP_5255 at 5998.901 kb on + strand, within PP_5255 at 5998.901 kb on + strand, within PP_5255 at 5998.974 kb on + strand, within PP_5255 at 5998.974 kb on + strand, within PP_5255 at 5998.975 kb on - strand, within PP_5255 at 5998.975 kb on - strand, within PP_5255
Per-strain Table
Position Strand Gene LocusTag Fraction Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs remove 5,996,268 + PP_5252 0.61 +0.0 5,996,269 - PP_5252 0.62 -0.2 5,996,284 + PP_5252 0.62 +1.5 5,996,284 + PP_5252 0.62 -0.6 5,996,285 - PP_5252 0.62 -0.4 5,996,308 - PP_5252 0.63 +0.1 5,996,538 + PP_5252 0.75 -0.2 5,996,538 + PP_5252 0.75 -0.2 5,996,539 - PP_5252 0.75 -0.1 5,996,579 - PP_5252 0.77 +0.2 5,996,661 + PP_5252 0.81 -1.2 5,996,661 + PP_5252 0.81 -0.0 5,996,662 - PP_5252 0.81 +1.4 5,997,187 - +0.3 5,997,198 - -0.0 5,997,233 - +0.2 5,997,310 + +0.8 5,997,310 + -0.5 5,997,311 - -0.9 5,997,311 - +0.8 5,997,311 - -0.2 5,997,311 - +0.3 5,997,311 - +1.1 5,997,738 - PP_5253 0.62 +1.0 5,997,739 + PP_5253 0.62 +2.5 5,997,740 - PP_5253 0.62 -0.2 5,997,842 - PP_5253 0.75 +0.1 5,997,842 - PP_5253 0.75 +0.7 5,998,012 + +0.8 5,998,012 + -0.7 5,998,012 + -1.2 5,998,050 - +0.2 5,998,055 + -0.7 5,998,056 - -0.5 5,998,139 + PP_5254 0.14 -0.8 5,998,139 + PP_5254 0.14 +0.2 5,998,139 + PP_5254 0.14 -0.0 5,998,139 + PP_5254 0.14 -0.6 5,998,139 + PP_5254 0.14 -1.3 5,998,140 - PP_5254 0.15 -0.4 5,998,140 - PP_5254 0.15 +0.6 5,998,140 - PP_5254 0.15 +0.0 5,998,274 + PP_5254 0.54 -1.0 5,998,274 + PP_5254 0.54 -0.9 5,998,274 + PP_5254 0.54 +0.4 5,998,357 + PP_5254 0.79 -0.0 5,998,357 + PP_5254 0.79 +0.2 5,998,358 - PP_5254 0.79 +0.4 5,998,358 - PP_5254 0.79 -0.7 5,998,358 - PP_5254 0.79 -0.6 5,998,358 - PP_5254 0.79 +0.8 5,998,358 - PP_5254 0.79 -0.6 5,998,464 - +0.1 5,998,464 - +0.2 5,998,464 - +0.8 5,998,464 - -1.2 5,998,464 - -0.6 5,998,518 - -0.3 5,998,518 - -0.1 5,998,541 + +0.1 5,998,542 - +0.6 5,998,786 + PP_5255 0.43 +1.4 5,998,787 - PP_5255 0.43 +0.1 5,998,788 - PP_5255 0.43 -0.3 5,998,901 + PP_5255 0.61 +0.2 5,998,901 + PP_5255 0.61 +1.2 5,998,974 + PP_5255 0.73 +1.2 5,998,974 + PP_5255 0.73 +1.1 5,998,975 - PP_5255 0.73 -2.5 5,998,975 - PP_5255 0.73 +0.7
Or see this region's nucleotide sequence