Strain Fitness in Pseudomonas putida KT2440 around PP_5255

Experiment: Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_5253 and PP_5254 are separated by 40 nucleotidesPP_5254 and PP_5255 are separated by 87 nucleotidesPP_5255 and PP_5256 are separated by 320 nucleotides PP_5253: PP_5253 - Arylesterase, at 5,997,231 to 5,998,049 _5253 PP_5254: PP_5254 - conserved protein of unknown function, at 5,998,090 to 5,998,428 _5254 PP_5255: PP_5255 - putative hydrolase, at 5,998,516 to 5,999,145 _5255 PP_5256: PP_5256 - Cyclic nucleotide-binding protein, at 5,999,466 to 6,000,893 _5256 Position (kb) 5998 5999 6000Strain fitness (log2 ratio) -2 -1 0 1at 5997.738 kb on - strand, within PP_5253at 5997.739 kb on + strand, within PP_5253at 5997.740 kb on - strand, within PP_5253at 5997.842 kb on - strand, within PP_5253at 5997.842 kb on - strand, within PP_5253at 5998.012 kb on + strandat 5998.012 kb on + strandat 5998.012 kb on + strandat 5998.050 kb on - strandat 5998.055 kb on + strandat 5998.056 kb on - strandat 5998.139 kb on + strand, within PP_5254at 5998.139 kb on + strand, within PP_5254at 5998.139 kb on + strand, within PP_5254at 5998.139 kb on + strand, within PP_5254at 5998.139 kb on + strand, within PP_5254at 5998.140 kb on - strand, within PP_5254at 5998.140 kb on - strand, within PP_5254at 5998.140 kb on - strand, within PP_5254at 5998.274 kb on + strand, within PP_5254at 5998.274 kb on + strand, within PP_5254at 5998.274 kb on + strand, within PP_5254at 5998.357 kb on + strand, within PP_5254at 5998.357 kb on + strand, within PP_5254at 5998.358 kb on - strand, within PP_5254at 5998.358 kb on - strand, within PP_5254at 5998.358 kb on - strand, within PP_5254at 5998.358 kb on - strand, within PP_5254at 5998.358 kb on - strand, within PP_5254at 5998.464 kb on - strandat 5998.464 kb on - strandat 5998.464 kb on - strandat 5998.464 kb on - strandat 5998.464 kb on - strandat 5998.518 kb on - strandat 5998.518 kb on - strandat 5998.541 kb on + strandat 5998.542 kb on - strandat 5998.786 kb on + strand, within PP_5255at 5998.787 kb on - strand, within PP_5255at 5998.788 kb on - strand, within PP_5255at 5998.901 kb on + strand, within PP_5255at 5998.901 kb on + strand, within PP_5255at 5998.974 kb on + strand, within PP_5255at 5998.974 kb on + strand, within PP_5255at 5998.975 kb on - strand, within PP_5255at 5998.975 kb on - strand, within PP_5255at 5999.099 kb on - strandat 5999.129 kb on + strandat 5999.178 kb on - strandat 5999.233 kb on + strandat 5999.233 kb on + strandat 5999.234 kb on - strandat 5999.237 kb on + strandat 5999.356 kb on + strandat 5999.356 kb on + strandat 5999.426 kb on + strandat 5999.426 kb on + strandat 5999.426 kb on + strandat 5999.426 kb on + strandat 5999.427 kb on - strandat 5999.427 kb on - strandat 5999.427 kb on - strandat 5999.427 kb on - strandat 5999.427 kb on - strandat 5999.427 kb on - strandat 5999.427 kb on - strandat 5999.430 kb on - strandat 5999.430 kb on - strandat 5999.430 kb on - strandat 5999.430 kb on - strandat 5999.430 kb on - strandat 5999.430 kb on - strandat 5999.430 kb on - strandat 5999.432 kb on + strandat 5999.690 kb on - strand, within PP_5256at 5999.737 kb on + strand, within PP_5256at 5999.841 kb on + strand, within PP_5256at 6000.142 kb on + strand, within PP_5256

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Per-strain Table

Position Strand Gene LocusTag Fraction Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs
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5,997,738 - PP_5253 0.62 -1.0
5,997,739 + PP_5253 0.62 +0.7
5,997,740 - PP_5253 0.62 +0.1
5,997,842 - PP_5253 0.75 +0.5
5,997,842 - PP_5253 0.75 +0.8
5,998,012 + +0.3
5,998,012 + +1.3
5,998,012 + +0.1
5,998,050 - +0.1
5,998,055 + +0.6
5,998,056 - +0.5
5,998,139 + PP_5254 0.14 +0.8
5,998,139 + PP_5254 0.14 +0.1
5,998,139 + PP_5254 0.14 -0.2
5,998,139 + PP_5254 0.14 +1.1
5,998,139 + PP_5254 0.14 -0.0
5,998,140 - PP_5254 0.15 +0.1
5,998,140 - PP_5254 0.15 +0.4
5,998,140 - PP_5254 0.15 +0.2
5,998,274 + PP_5254 0.54 -0.5
5,998,274 + PP_5254 0.54 -1.3
5,998,274 + PP_5254 0.54 -0.1
5,998,357 + PP_5254 0.79 -0.0
5,998,357 + PP_5254 0.79 +1.3
5,998,358 - PP_5254 0.79 +0.6
5,998,358 - PP_5254 0.79 -0.1
5,998,358 - PP_5254 0.79 +0.6
5,998,358 - PP_5254 0.79 -0.9
5,998,358 - PP_5254 0.79 -1.1
5,998,464 - -2.3
5,998,464 - +1.0
5,998,464 - -0.8
5,998,464 - -0.7
5,998,464 - -0.3
5,998,518 - -0.8
5,998,518 - -0.8
5,998,541 + +1.1
5,998,542 - +0.4
5,998,786 + PP_5255 0.43 +0.8
5,998,787 - PP_5255 0.43 +0.5
5,998,788 - PP_5255 0.43 -0.6
5,998,901 + PP_5255 0.61 +1.6
5,998,901 + PP_5255 0.61 +1.2
5,998,974 + PP_5255 0.73 +0.1
5,998,974 + PP_5255 0.73 -0.3
5,998,975 - PP_5255 0.73 -2.2
5,998,975 - PP_5255 0.73 -0.5
5,999,099 - +0.1
5,999,129 + +0.3
5,999,178 - -0.0
5,999,233 + -0.2
5,999,233 + -2.0
5,999,234 - +0.8
5,999,237 + -0.7
5,999,356 + -1.7
5,999,356 + -0.1
5,999,426 + +1.0
5,999,426 + +0.2
5,999,426 + +0.7
5,999,426 + -0.0
5,999,427 - +0.5
5,999,427 - +0.7
5,999,427 - +0.4
5,999,427 - -0.3
5,999,427 - +0.2
5,999,427 - +0.0
5,999,427 - -0.2
5,999,430 - -0.6
5,999,430 - +1.3
5,999,430 - +0.4
5,999,430 - +0.3
5,999,430 - -1.2
5,999,430 - -1.5
5,999,430 - -0.7
5,999,432 + +0.3
5,999,690 - PP_5256 0.16 -0.6
5,999,737 + PP_5256 0.19 +1.3
5,999,841 + PP_5256 0.26 -0.3
6,000,142 + PP_5256 0.47 +1.0

Or see this region's nucleotide sequence