Experiment: Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_4684 and PP_4685 are separated by 158 nucleotides PP_4685 and PP_4686 are separated by 180 nucleotides
PP_4684: PP_4684 - conserved protein of unknown function with kinase-like domain, at 5,323,367 to 5,324,929
_4684
PP_4685: PP_4685 - conserved protein of unknown function, at 5,325,088 to 5,325,366
_4685
PP_4686: PP_4686 - putative lipoprotein, at 5,325,547 to 5,326,431
_4686
Position (kb) 5325
5326 Strain fitness (log2 ratio) -2
-1
0
1 at 5324.180 kb on + strand, within PP_4684 at 5324.202 kb on - strand, within PP_4684 at 5324.228 kb on + strand, within PP_4684 at 5324.334 kb on - strand, within PP_4684 at 5324.334 kb on - strand, within PP_4684 at 5324.354 kb on + strand, within PP_4684 at 5324.473 kb on - strand, within PP_4684 at 5324.479 kb on + strand, within PP_4684 at 5324.535 kb on + strand, within PP_4684 at 5324.535 kb on + strand, within PP_4684 at 5324.535 kb on + strand, within PP_4684 at 5324.535 kb on + strand, within PP_4684 at 5324.535 kb on + strand, within PP_4684 at 5324.536 kb on - strand, within PP_4684 at 5324.537 kb on + strand, within PP_4684 at 5324.537 kb on + strand, within PP_4684 at 5324.537 kb on + strand, within PP_4684 at 5324.537 kb on + strand, within PP_4684 at 5324.537 kb on + strand, within PP_4684 at 5324.537 kb on + strand, within PP_4684 at 5324.537 kb on + strand, within PP_4684 at 5324.538 kb on - strand, within PP_4684 at 5324.538 kb on - strand, within PP_4684 at 5324.538 kb on - strand, within PP_4684 at 5324.564 kb on + strand, within PP_4684 at 5324.564 kb on + strand, within PP_4684 at 5324.565 kb on - strand, within PP_4684 at 5324.633 kb on + strand, within PP_4684 at 5324.634 kb on - strand, within PP_4684 at 5324.927 kb on + strand at 5324.927 kb on + strand at 5324.928 kb on - strand at 5324.928 kb on - strand at 5324.928 kb on - strand at 5324.928 kb on - strand at 5325.049 kb on + strand at 5325.202 kb on + strand, within PP_4685 at 5325.203 kb on - strand, within PP_4685 at 5325.250 kb on + strand, within PP_4685 at 5325.250 kb on + strand, within PP_4685 at 5325.250 kb on + strand, within PP_4685 at 5325.250 kb on + strand, within PP_4685 at 5325.250 kb on + strand, within PP_4685 at 5325.251 kb on - strand, within PP_4685 at 5325.251 kb on - strand, within PP_4685 at 5325.251 kb on - strand, within PP_4685 at 5325.251 kb on - strand, within PP_4685 at 5325.251 kb on - strand, within PP_4685 at 5325.251 kb on - strand, within PP_4685 at 5325.294 kb on - strand, within PP_4685 at 5325.364 kb on + strand at 5325.443 kb on + strand at 5325.443 kb on + strand at 5325.443 kb on + strand at 5325.443 kb on + strand at 5325.443 kb on + strand at 5325.443 kb on + strand at 5325.444 kb on - strand at 5325.444 kb on - strand at 5325.444 kb on - strand at 5325.444 kb on - strand at 5325.471 kb on + strand at 5325.471 kb on + strand at 5325.471 kb on + strand at 5325.472 kb on - strand at 5325.488 kb on - strand at 5325.488 kb on - strand at 5325.569 kb on + strand at 5325.570 kb on - strand at 5325.570 kb on - strand at 5325.570 kb on - strand at 5325.605 kb on + strand at 5325.605 kb on + strand at 5325.605 kb on + strand at 5325.606 kb on - strand at 5325.606 kb on - strand at 5325.606 kb on - strand at 5325.606 kb on - strand at 5325.606 kb on - strand at 5325.606 kb on - strand at 5325.656 kb on - strand, within PP_4686 at 5325.656 kb on - strand, within PP_4686 at 5325.700 kb on + strand, within PP_4686 at 5325.700 kb on + strand, within PP_4686 at 5325.701 kb on - strand, within PP_4686 at 5325.725 kb on + strand, within PP_4686 at 5325.725 kb on + strand, within PP_4686 at 5325.725 kb on + strand, within PP_4686 at 5325.725 kb on + strand, within PP_4686 at 5325.725 kb on + strand, within PP_4686 at 5325.725 kb on + strand, within PP_4686 at 5325.726 kb on - strand, within PP_4686 at 5325.726 kb on - strand, within PP_4686 at 5325.726 kb on - strand, within PP_4686 at 5326.016 kb on + strand, within PP_4686 at 5326.273 kb on + strand, within PP_4686 at 5326.273 kb on + strand, within PP_4686 at 5326.273 kb on + strand, within PP_4686 at 5326.273 kb on + strand, within PP_4686 at 5326.274 kb on - strand, within PP_4686 at 5326.274 kb on - strand, within PP_4686 at 5326.274 kb on - strand, within PP_4686 at 5326.274 kb on - strand, within PP_4686 at 5326.274 kb on - strand, within PP_4686
Per-strain Table
Position Strand Gene LocusTag Fraction Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs remove 5,324,180 + PP_4684 0.52 +0.0 5,324,202 - PP_4684 0.53 -0.5 5,324,228 + PP_4684 0.55 -0.6 5,324,334 - PP_4684 0.62 -0.4 5,324,334 - PP_4684 0.62 -0.9 5,324,354 + PP_4684 0.63 -1.8 5,324,473 - PP_4684 0.71 +0.4 5,324,479 + PP_4684 0.71 +0.5 5,324,535 + PP_4684 0.75 -0.5 5,324,535 + PP_4684 0.75 -1.1 5,324,535 + PP_4684 0.75 -0.4 5,324,535 + PP_4684 0.75 -1.6 5,324,535 + PP_4684 0.75 -1.2 5,324,536 - PP_4684 0.75 -1.3 5,324,537 + PP_4684 0.75 -0.7 5,324,537 + PP_4684 0.75 +0.3 5,324,537 + PP_4684 0.75 -0.6 5,324,537 + PP_4684 0.75 +0.2 5,324,537 + PP_4684 0.75 -1.2 5,324,537 + PP_4684 0.75 +1.0 5,324,537 + PP_4684 0.75 +0.3 5,324,538 - PP_4684 0.75 -1.0 5,324,538 - PP_4684 0.75 -1.4 5,324,538 - PP_4684 0.75 -1.8 5,324,564 + PP_4684 0.77 -1.0 5,324,564 + PP_4684 0.77 +1.1 5,324,565 - PP_4684 0.77 +0.3 5,324,633 + PP_4684 0.81 +0.8 5,324,634 - PP_4684 0.81 -0.5 5,324,927 + +0.2 5,324,927 + +0.0 5,324,928 - +0.6 5,324,928 - +0.2 5,324,928 - -0.8 5,324,928 - +0.8 5,325,049 + -1.3 5,325,202 + PP_4685 0.41 +1.0 5,325,203 - PP_4685 0.41 +0.1 5,325,250 + PP_4685 0.58 -0.4 5,325,250 + PP_4685 0.58 +0.3 5,325,250 + PP_4685 0.58 +0.8 5,325,250 + PP_4685 0.58 +1.6 5,325,250 + PP_4685 0.58 +0.2 5,325,251 - PP_4685 0.58 +0.4 5,325,251 - PP_4685 0.58 +0.6 5,325,251 - PP_4685 0.58 +1.6 5,325,251 - PP_4685 0.58 +1.0 5,325,251 - PP_4685 0.58 +1.0 5,325,251 - PP_4685 0.58 +1.0 5,325,294 - PP_4685 0.74 +0.2 5,325,364 + -0.2 5,325,443 + -0.0 5,325,443 + +0.6 5,325,443 + +0.2 5,325,443 + +0.9 5,325,443 + -1.2 5,325,443 + +0.3 5,325,444 - +0.3 5,325,444 - +0.8 5,325,444 - +0.6 5,325,444 - -1.1 5,325,471 + +0.2 5,325,471 + -0.1 5,325,471 + -0.5 5,325,472 - -1.4 5,325,488 - +1.0 5,325,488 - +0.2 5,325,569 + -0.5 5,325,570 - -0.9 5,325,570 - +0.1 5,325,570 - -0.0 5,325,605 + +0.8 5,325,605 + +1.4 5,325,605 + +0.3 5,325,606 - +0.5 5,325,606 - -0.2 5,325,606 - +0.0 5,325,606 - +0.1 5,325,606 - -0.0 5,325,606 - -2.5 5,325,656 - PP_4686 0.12 +0.4 5,325,656 - PP_4686 0.12 +1.5 5,325,700 + PP_4686 0.17 +1.0 5,325,700 + PP_4686 0.17 -0.2 5,325,701 - PP_4686 0.17 -0.6 5,325,725 + PP_4686 0.20 -0.5 5,325,725 + PP_4686 0.20 +1.1 5,325,725 + PP_4686 0.20 -0.2 5,325,725 + PP_4686 0.20 +1.0 5,325,725 + PP_4686 0.20 +1.2 5,325,725 + PP_4686 0.20 +1.1 5,325,726 - PP_4686 0.20 +0.4 5,325,726 - PP_4686 0.20 +1.0 5,325,726 - PP_4686 0.20 +1.2 5,326,016 + PP_4686 0.53 -1.0 5,326,273 + PP_4686 0.82 +0.2 5,326,273 + PP_4686 0.82 +0.2 5,326,273 + PP_4686 0.82 +0.6 5,326,273 + PP_4686 0.82 +1.3 5,326,274 - PP_4686 0.82 +0.9 5,326,274 - PP_4686 0.82 -1.4 5,326,274 - PP_4686 0.82 -0.5 5,326,274 - PP_4686 0.82 -0.2 5,326,274 - PP_4686 0.82 +0.8
Or see this region's nucleotide sequence