Experiment: Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_4579 and PP_4580 are separated by 72 nucleotides PP_4580 and PP_4581 are separated by 9 nucleotides PP_4581 and PP_4582 are separated by 14 nucleotides PP_4582 and PP_4583 are separated by 179 nucleotides
PP_4579: PP_4579 - Transcriptional regulator, LysR family, at 5,198,714 to 5,199,625
_4579
PP_4580: PP_4580 - conserved protein of unknown function, at 5,199,698 to 5,200,219
_4580
PP_4581: PP_4581 - putative amidotransferase, at 5,200,229 to 5,201,002
_4581
PP_4582: PP_4582 - conserved membrane protein of unknown function, at 5,201,017 to 5,201,514
_4582
PP_4583: PP_4583 - putative Peptidase, at 5,201,694 to 5,203,736
_4583
Position (kb) 5200
5201
5202 Strain fitness (log2 ratio) -2
-1
0
1 at 5199.245 kb on + strand, within PP_4579 at 5199.245 kb on + strand, within PP_4579 at 5199.246 kb on - strand, within PP_4579 at 5199.246 kb on - strand at 5199.246 kb on - strand, within PP_4579 at 5199.682 kb on - strand at 5199.688 kb on - strand at 5199.827 kb on + strand, within PP_4580 at 5199.843 kb on + strand, within PP_4580 at 5199.843 kb on + strand, within PP_4580 at 5199.844 kb on - strand, within PP_4580 at 5199.850 kb on - strand, within PP_4580 at 5199.890 kb on + strand, within PP_4580 at 5200.138 kb on - strand, within PP_4580 at 5200.138 kb on - strand, within PP_4580 at 5200.138 kb on - strand, within PP_4580 at 5200.206 kb on + strand at 5200.207 kb on - strand at 5200.231 kb on - strand at 5200.231 kb on - strand at 5200.771 kb on + strand, within PP_4581 at 5200.772 kb on - strand, within PP_4581 at 5200.890 kb on - strand, within PP_4581 at 5201.002 kb on + strand at 5201.002 kb on + strand at 5201.003 kb on - strand at 5201.003 kb on - strand at 5201.003 kb on - strand at 5201.225 kb on + strand, within PP_4582 at 5201.226 kb on - strand, within PP_4582 at 5201.226 kb on - strand, within PP_4582 at 5201.249 kb on + strand, within PP_4582 at 5201.249 kb on + strand, within PP_4582 at 5201.250 kb on - strand, within PP_4582 at 5201.250 kb on - strand, within PP_4582 at 5201.462 kb on - strand, within PP_4582 at 5201.477 kb on + strand at 5201.498 kb on + strand at 5201.546 kb on + strand at 5201.546 kb on + strand at 5201.547 kb on - strand at 5201.547 kb on - strand at 5201.547 kb on - strand at 5201.547 kb on - strand at 5201.547 kb on - strand at 5201.617 kb on - strand at 5201.748 kb on + strand at 5201.749 kb on - strand at 5201.782 kb on + strand at 5201.783 kb on - strand at 5201.791 kb on - strand at 5201.812 kb on - strand at 5201.922 kb on + strand, within PP_4583 at 5201.928 kb on + strand, within PP_4583 at 5201.928 kb on + strand, within PP_4583 at 5201.928 kb on + strand, within PP_4583 at 5201.929 kb on - strand, within PP_4583 at 5201.929 kb on - strand, within PP_4583 at 5201.929 kb on - strand, within PP_4583 at 5201.931 kb on + strand, within PP_4583 at 5201.931 kb on + strand, within PP_4583 at 5201.931 kb on + strand, within PP_4583 at 5201.931 kb on + strand, within PP_4583 at 5201.932 kb on - strand, within PP_4583
Per-strain Table
Position Strand Gene LocusTag Fraction Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs remove 5,199,245 + PP_4579 0.58 -0.1 5,199,245 + PP_4579 0.58 -1.0 5,199,246 - PP_4579 0.58 -0.5 5,199,246 - -0.2 5,199,246 - PP_4579 0.58 -0.1 5,199,682 - -1.5 5,199,688 - -1.4 5,199,827 + PP_4580 0.25 +0.1 5,199,843 + PP_4580 0.28 -0.4 5,199,843 + PP_4580 0.28 +0.1 5,199,844 - PP_4580 0.28 +0.7 5,199,850 - PP_4580 0.29 -0.4 5,199,890 + PP_4580 0.37 -0.8 5,200,138 - PP_4580 0.84 +1.0 5,200,138 - PP_4580 0.84 +0.9 5,200,138 - PP_4580 0.84 +0.1 5,200,206 + -0.2 5,200,207 - -0.8 5,200,231 - -2.1 5,200,231 - +0.4 5,200,771 + PP_4581 0.70 +0.5 5,200,772 - PP_4581 0.70 +0.9 5,200,890 - PP_4581 0.85 +0.2 5,201,002 + -1.1 5,201,002 + +0.6 5,201,003 - +0.4 5,201,003 - -0.2 5,201,003 - -0.1 5,201,225 + PP_4582 0.42 -0.1 5,201,226 - PP_4582 0.42 -1.5 5,201,226 - PP_4582 0.42 -0.2 5,201,249 + PP_4582 0.47 +0.2 5,201,249 + PP_4582 0.47 -1.4 5,201,250 - PP_4582 0.47 +0.5 5,201,250 - PP_4582 0.47 -0.8 5,201,462 - PP_4582 0.89 +0.4 5,201,477 + +0.7 5,201,498 + +0.5 5,201,546 + +0.7 5,201,546 + -1.0 5,201,547 - +0.3 5,201,547 - -0.9 5,201,547 - +0.3 5,201,547 - +0.3 5,201,547 - +1.1 5,201,617 - -0.1 5,201,748 + +0.8 5,201,749 - -0.2 5,201,782 + +0.7 5,201,783 - -1.3 5,201,791 - +1.3 5,201,812 - +0.1 5,201,922 + PP_4583 0.11 +0.8 5,201,928 + PP_4583 0.11 -1.2 5,201,928 + PP_4583 0.11 -0.4 5,201,928 + PP_4583 0.11 +0.0 5,201,929 - PP_4583 0.12 -0.5 5,201,929 - PP_4583 0.12 -1.1 5,201,929 - PP_4583 0.12 -0.5 5,201,931 + PP_4583 0.12 +0.1 5,201,931 + PP_4583 0.12 -0.2 5,201,931 + PP_4583 0.12 +0.1 5,201,931 + PP_4583 0.12 +0.4 5,201,932 - PP_4583 0.12 -0.3
Or see this region's nucleotide sequence