Experiment: Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_4354 and PP_4355 are separated by 21 nucleotides PP_4355 and PP_4356 overlap by 1 nucleotides PP_4356 and PP_4357 are separated by 12 nucleotides PP_4357 and PP_4358 are separated by 29 nucleotides
PP_4354: PP_4354 - flagellar export apparatus subunit, at 4,947,367 to 4,947,636
_4354
PP_4355: PP_4355 - flagellar export apparatus subunit, at 4,947,658 to 4,948,413
_4355
PP_4356: PP_4356 - Flagellar protein FliO, at 4,948,413 to 4,948,847
_4356
PP_4357: PP_4357 - C-ring protein of the flagellar basal body, at 4,948,860 to 4,949,345
_4357
PP_4358: PP_4358 - flagellar synthesis, switching and energizing component, at 4,949,375 to 4,950,343
_4358
Position (kb) 4948
4949 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 4947.774 kb on + strand, within PP_4355 at 4947.775 kb on - strand, within PP_4355 at 4948.395 kb on + strand at 4948.396 kb on - strand at 4948.396 kb on - strand at 4948.396 kb on - strand at 4948.396 kb on - strand at 4948.518 kb on + strand, within PP_4356 at 4948.518 kb on + strand, within PP_4356 at 4948.547 kb on + strand, within PP_4356 at 4948.547 kb on + strand, within PP_4356 at 4948.877 kb on + strand at 4949.357 kb on + strand at 4949.357 kb on + strand at 4949.358 kb on - strand at 4949.358 kb on - strand at 4949.358 kb on - strand at 4949.811 kb on + strand, within PP_4358 at 4949.812 kb on - strand, within PP_4358
Per-strain Table
Position Strand Gene LocusTag Fraction Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs remove 4,947,774 + PP_4355 0.15 -2.5 4,947,775 - PP_4355 0.15 -0.9 4,948,395 + -3.6 4,948,396 - -0.9 4,948,396 - -1.4 4,948,396 - -1.8 4,948,396 - -0.8 4,948,518 + PP_4356 0.24 -1.9 4,948,518 + PP_4356 0.24 -2.1 4,948,547 + PP_4356 0.31 -1.6 4,948,547 + PP_4356 0.31 -3.2 4,948,877 + -0.6 4,949,357 + -2.5 4,949,357 + -3.0 4,949,358 - +1.1 4,949,358 - +1.0 4,949,358 - -0.3 4,949,811 + PP_4358 0.45 -4.5 4,949,812 - PP_4358 0.45 -0.9
Or see this region's nucleotide sequence