Strain Fitness in Pseudomonas putida KT2440 around PP_4217

Experiment: Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_4216 and PP_4217 are separated by 86 nucleotidesPP_4217 and PP_4218 are separated by 68 nucleotides PP_4216: PP_4216 - pyoverdine ABC export system, fused ATPase and permease components, at 4,763,603 to 4,765,261 _4216 PP_4217: PP_4217 - outer membrane ferripyoverdine receptor FpvA, TonB-dependent, at 4,765,348 to 4,767,786 _4217 PP_4218: PP_4218 - Lipase/esterase family protein, at 4,767,855 to 4,768,811 _4218 Position (kb) 4765 4766 4767 4768Strain fitness (log2 ratio) -2 -1 0 1 2at 4764.770 kb on + strand, within PP_4216at 4764.771 kb on - strandat 4764.869 kb on + strand, within PP_4216at 4765.181 kb on + strandat 4765.648 kb on + strand, within PP_4217at 4765.648 kb on + strand, within PP_4217at 4765.648 kb on + strand, within PP_4217at 4765.649 kb on - strand, within PP_4217at 4765.731 kb on + strand, within PP_4217at 4765.732 kb on - strand, within PP_4217at 4765.768 kb on + strand, within PP_4217at 4765.768 kb on + strand, within PP_4217at 4765.768 kb on + strand, within PP_4217at 4765.770 kb on + strand, within PP_4217at 4766.136 kb on + strand, within PP_4217at 4766.189 kb on - strand, within PP_4217at 4766.261 kb on - strand, within PP_4217at 4766.261 kb on - strand, within PP_4217at 4766.261 kb on - strand, within PP_4217at 4766.279 kb on - strand, within PP_4217at 4766.279 kb on - strand, within PP_4217at 4766.314 kb on + strand, within PP_4217at 4766.314 kb on + strand, within PP_4217at 4766.476 kb on + strand, within PP_4217at 4766.476 kb on + strand, within PP_4217at 4766.496 kb on + strand, within PP_4217at 4766.496 kb on + strand, within PP_4217at 4766.496 kb on + strand, within PP_4217at 4766.496 kb on + strand, within PP_4217at 4766.497 kb on - strand, within PP_4217at 4766.678 kb on - strand, within PP_4217at 4766.678 kb on - strand, within PP_4217at 4766.678 kb on - strand, within PP_4217at 4766.686 kb on + strand, within PP_4217at 4766.687 kb on - strand, within PP_4217at 4766.687 kb on - strand, within PP_4217at 4766.851 kb on - strand, within PP_4217at 4766.854 kb on + strand, within PP_4217at 4766.854 kb on + strand, within PP_4217at 4766.854 kb on + strand, within PP_4217at 4766.855 kb on - strand, within PP_4217at 4766.855 kb on - strand, within PP_4217at 4766.890 kb on + strand, within PP_4217at 4766.890 kb on + strand, within PP_4217at 4766.890 kb on + strand, within PP_4217at 4766.890 kb on + strand, within PP_4217at 4766.890 kb on + strand, within PP_4217at 4766.891 kb on - strand, within PP_4217at 4766.995 kb on + strand, within PP_4217at 4766.995 kb on + strand, within PP_4217at 4766.998 kb on + strand, within PP_4217at 4766.999 kb on - strand, within PP_4217at 4766.999 kb on - strand, within PP_4217at 4767.013 kb on + strand, within PP_4217at 4767.013 kb on + strand, within PP_4217at 4767.014 kb on - strand, within PP_4217at 4767.014 kb on - strand, within PP_4217at 4767.055 kb on + strand, within PP_4217at 4767.056 kb on - strand, within PP_4217at 4767.082 kb on + strand, within PP_4217at 4767.091 kb on + strand, within PP_4217at 4767.091 kb on + strand, within PP_4217at 4767.092 kb on - strand, within PP_4217at 4767.099 kb on + strand, within PP_4217at 4767.100 kb on - strand, within PP_4217at 4767.100 kb on - strand, within PP_4217at 4767.100 kb on - strand, within PP_4217at 4767.167 kb on - strand, within PP_4217at 4767.191 kb on - strand, within PP_4217at 4767.265 kb on - strand, within PP_4217at 4767.265 kb on - strand, within PP_4217at 4767.295 kb on + strand, within PP_4217at 4767.295 kb on + strand, within PP_4217at 4767.296 kb on - strand, within PP_4217at 4767.296 kb on - strand, within PP_4217at 4767.314 kb on + strand, within PP_4217at 4767.314 kb on + strand, within PP_4217at 4767.382 kb on + strand, within PP_4217at 4767.388 kb on + strand, within PP_4217at 4767.388 kb on + strand, within PP_4217at 4767.388 kb on + strand, within PP_4217at 4767.388 kb on + strand, within PP_4217at 4767.389 kb on - strand, within PP_4217at 4767.487 kb on + strand, within PP_4217at 4767.488 kb on - strand, within PP_4217at 4767.488 kb on - strand, within PP_4217at 4767.535 kb on + strand, within PP_4217at 4767.536 kb on - strand, within PP_4217at 4767.536 kb on - strand, within PP_4217at 4767.536 kb on - strand, within PP_4217at 4767.536 kb on - strand, within PP_4217at 4767.536 kb on - strand, within PP_4217at 4767.584 kb on - strandat 4767.584 kb on - strandat 4767.584 kb on - strandat 4767.584 kb on - strandat 4767.604 kb on + strandat 4767.604 kb on + strandat 4767.631 kb on + strandat 4767.632 kb on - strandat 4767.632 kb on - strandat 4767.677 kb on + strandat 4767.677 kb on + strandat 4767.678 kb on - strandat 4767.691 kb on + strandat 4767.691 kb on + strandat 4767.694 kb on + strandat 4767.695 kb on - strandat 4767.739 kb on + strandat 4767.739 kb on + strandat 4767.739 kb on + strandat 4767.739 kb on + strandat 4767.739 kb on + strandat 4767.740 kb on - strandat 4767.740 kb on - strandat 4767.740 kb on - strandat 4767.740 kb on - strandat 4767.775 kb on + strandat 4767.775 kb on + strandat 4767.926 kb on + strandat 4767.927 kb on - strandat 4767.927 kb on - strandat 4768.003 kb on + strand, within PP_4218at 4768.132 kb on + strand, within PP_4218at 4768.132 kb on + strand, within PP_4218at 4768.132 kb on + strand, within PP_4218at 4768.232 kb on - strand, within PP_4218at 4768.239 kb on + strand, within PP_4218at 4768.240 kb on - strand, within PP_4218at 4768.240 kb on - strand, within PP_4218at 4768.240 kb on - strand, within PP_4218at 4768.240 kb on - strand, within PP_4218at 4768.308 kb on - strand, within PP_4218at 4768.528 kb on + strand, within PP_4218at 4768.528 kb on + strand, within PP_4218at 4768.547 kb on - strand, within PP_4218at 4768.595 kb on - strand, within PP_4218at 4768.613 kb on + strand, within PP_4218at 4768.613 kb on + strand, within PP_4218at 4768.614 kb on - strand, within PP_4218at 4768.614 kb on - strand, within PP_4218at 4768.783 kb on + strandat 4768.784 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs
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4,764,770 + PP_4216 0.70 +1.0
4,764,771 - +0.7
4,764,869 + PP_4216 0.76 -0.3
4,765,181 + +0.2
4,765,648 + PP_4217 0.12 -0.9
4,765,648 + PP_4217 0.12 -1.0
4,765,648 + PP_4217 0.12 +0.3
4,765,649 - PP_4217 0.12 +0.4
4,765,731 + PP_4217 0.16 +0.9
4,765,732 - PP_4217 0.16 +0.6
4,765,768 + PP_4217 0.17 +0.4
4,765,768 + PP_4217 0.17 +1.1
4,765,768 + PP_4217 0.17 -0.0
4,765,770 + PP_4217 0.17 +1.1
4,766,136 + PP_4217 0.32 +1.2
4,766,189 - PP_4217 0.34 +0.5
4,766,261 - PP_4217 0.37 +0.8
4,766,261 - PP_4217 0.37 +0.6
4,766,261 - PP_4217 0.37 +0.6
4,766,279 - PP_4217 0.38 +0.1
4,766,279 - PP_4217 0.38 -0.9
4,766,314 + PP_4217 0.40 +0.4
4,766,314 + PP_4217 0.40 +0.8
4,766,476 + PP_4217 0.46 +0.8
4,766,476 + PP_4217 0.46 +0.2
4,766,496 + PP_4217 0.47 -0.2
4,766,496 + PP_4217 0.47 +0.5
4,766,496 + PP_4217 0.47 +0.1
4,766,496 + PP_4217 0.47 +0.5
4,766,497 - PP_4217 0.47 +0.6
4,766,678 - PP_4217 0.55 +0.6
4,766,678 - PP_4217 0.55 -0.2
4,766,678 - PP_4217 0.55 -0.0
4,766,686 + PP_4217 0.55 +0.5
4,766,687 - PP_4217 0.55 +0.2
4,766,687 - PP_4217 0.55 +0.3
4,766,851 - PP_4217 0.62 -0.3
4,766,854 + PP_4217 0.62 +1.3
4,766,854 + PP_4217 0.62 +0.4
4,766,854 + PP_4217 0.62 +0.7
4,766,855 - PP_4217 0.62 +0.4
4,766,855 - PP_4217 0.62 +0.9
4,766,890 + PP_4217 0.63 -0.0
4,766,890 + PP_4217 0.63 +0.6
4,766,890 + PP_4217 0.63 +0.6
4,766,890 + PP_4217 0.63 +0.1
4,766,890 + PP_4217 0.63 -0.3
4,766,891 - PP_4217 0.63 +0.2
4,766,995 + PP_4217 0.68 -0.7
4,766,995 + PP_4217 0.68 +0.4
4,766,998 + PP_4217 0.68 +0.2
4,766,999 - PP_4217 0.68 -0.6
4,766,999 - PP_4217 0.68 +0.2
4,767,013 + PP_4217 0.68 +0.6
4,767,013 + PP_4217 0.68 +0.0
4,767,014 - PP_4217 0.68 +0.2
4,767,014 - PP_4217 0.68 -0.5
4,767,055 + PP_4217 0.70 +1.4
4,767,056 - PP_4217 0.70 +0.3
4,767,082 + PP_4217 0.71 +0.4
4,767,091 + PP_4217 0.71 -0.5
4,767,091 + PP_4217 0.71 +0.3
4,767,092 - PP_4217 0.72 +1.7
4,767,099 + PP_4217 0.72 +0.4
4,767,100 - PP_4217 0.72 +0.4
4,767,100 - PP_4217 0.72 +0.6
4,767,100 - PP_4217 0.72 +0.3
4,767,167 - PP_4217 0.75 +1.8
4,767,191 - PP_4217 0.76 +0.4
4,767,265 - PP_4217 0.79 -0.3
4,767,265 - PP_4217 0.79 +0.7
4,767,295 + PP_4217 0.80 +0.6
4,767,295 + PP_4217 0.80 +0.8
4,767,296 - PP_4217 0.80 +0.6
4,767,296 - PP_4217 0.80 +1.0
4,767,314 + PP_4217 0.81 +0.8
4,767,314 + PP_4217 0.81 +1.0
4,767,382 + PP_4217 0.83 +1.0
4,767,388 + PP_4217 0.84 +0.4
4,767,388 + PP_4217 0.84 +1.0
4,767,388 + PP_4217 0.84 +0.8
4,767,388 + PP_4217 0.84 -1.3
4,767,389 - PP_4217 0.84 +1.1
4,767,487 + PP_4217 0.88 +0.2
4,767,488 - PP_4217 0.88 +0.5
4,767,488 - PP_4217 0.88 +0.1
4,767,535 + PP_4217 0.90 -0.5
4,767,536 - PP_4217 0.90 -0.4
4,767,536 - PP_4217 0.90 +0.5
4,767,536 - PP_4217 0.90 +0.0
4,767,536 - PP_4217 0.90 -0.0
4,767,536 - PP_4217 0.90 -0.2
4,767,584 - +0.3
4,767,584 - +0.5
4,767,584 - +1.3
4,767,584 - -0.7
4,767,604 + +0.1
4,767,604 + -0.3
4,767,631 + -0.6
4,767,632 - +0.0
4,767,632 - -0.3
4,767,677 + -1.2
4,767,677 + -0.5
4,767,678 - +0.8
4,767,691 + -0.6
4,767,691 + +0.2
4,767,694 + -0.4
4,767,695 - -0.2
4,767,739 + -0.2
4,767,739 + +0.3
4,767,739 + +0.4
4,767,739 + +0.3
4,767,739 + +0.9
4,767,740 - +0.8
4,767,740 - -0.4
4,767,740 - +0.0
4,767,740 - -0.3
4,767,775 + +1.3
4,767,775 + -0.5
4,767,926 + +0.7
4,767,927 - -0.2
4,767,927 - -0.4
4,768,003 + PP_4218 0.15 -2.1
4,768,132 + PP_4218 0.29 +0.2
4,768,132 + PP_4218 0.29 -0.7
4,768,132 + PP_4218 0.29 +1.1
4,768,232 - PP_4218 0.39 +0.5
4,768,239 + PP_4218 0.40 +0.8
4,768,240 - PP_4218 0.40 -0.1
4,768,240 - PP_4218 0.40 +0.3
4,768,240 - PP_4218 0.40 +0.2
4,768,240 - PP_4218 0.40 -0.4
4,768,308 - PP_4218 0.47 -1.7
4,768,528 + PP_4218 0.70 +1.0
4,768,528 + PP_4218 0.70 -0.5
4,768,547 - PP_4218 0.72 +0.6
4,768,595 - PP_4218 0.77 +1.3
4,768,613 + PP_4218 0.79 -0.7
4,768,613 + PP_4218 0.79 -0.6
4,768,614 - PP_4218 0.79 +0.8
4,768,614 - PP_4218 0.79 +0.8
4,768,783 + +0.7
4,768,784 - -0.5

Or see this region's nucleotide sequence