Strain Fitness in Pseudomonas putida KT2440 around PP_5045

Experiment: Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_5044 and PP_5045 are separated by 128 nucleotidesPP_5045 and PP_5046 are separated by 470 nucleotides PP_5044: PP_5044 - ribosome associated GTPase, at 5,748,159 to 5,749,979 _5044 PP_5045: PP_5045 - tRNA sulfurtransferase, at 5,750,108 to 5,751,562 _5045 PP_5046: PP_5046 - glutamine synthetase, at 5,752,033 to 5,753,439 _5046 Position (kb) 5750 5751 5752Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5749.717 kb on - strand, within PP_5044at 5750.030 kb on + strandat 5750.030 kb on + strandat 5750.031 kb on - strandat 5750.031 kb on - strandat 5750.042 kb on - strandat 5750.083 kb on - strandat 5750.083 kb on - strandat 5750.083 kb on - strandat 5750.093 kb on + strandat 5750.109 kb on + strandat 5750.197 kb on - strandat 5750.250 kb on + strandat 5750.251 kb on - strandat 5750.781 kb on + strand, within PP_5045at 5750.782 kb on - strandat 5750.782 kb on - strand, within PP_5045at 5750.782 kb on - strand, within PP_5045at 5750.782 kb on - strand, within PP_5045at 5750.782 kb on - strand, within PP_5045at 5750.846 kb on + strand, within PP_5045at 5750.847 kb on - strand, within PP_5045at 5750.881 kb on - strand, within PP_5045at 5750.973 kb on + strand, within PP_5045at 5750.973 kb on + strand, within PP_5045at 5751.079 kb on - strand, within PP_5045at 5751.178 kb on - strand, within PP_5045at 5751.178 kb on - strand, within PP_5045at 5751.320 kb on + strand, within PP_5045at 5751.568 kb on - strandat 5751.610 kb on - strandat 5751.661 kb on + strandat 5751.662 kb on - strandat 5751.662 kb on - strandat 5751.662 kb on - strandat 5751.662 kb on - strandat 5751.723 kb on - strandat 5751.772 kb on - strandat 5751.804 kb on + strandat 5751.835 kb on + strandat 5751.836 kb on - strandat 5751.836 kb on - strandat 5751.892 kb on - strandat 5751.892 kb on - strandat 5752.013 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs
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5,749,717 - PP_5044 0.86 +0.1
5,750,030 + -0.5
5,750,030 + +2.1
5,750,031 - +0.9
5,750,031 - -3.3
5,750,042 - -2.3
5,750,083 - +0.6
5,750,083 - +1.7
5,750,083 - +0.2
5,750,093 + +0.5
5,750,109 + +2.1
5,750,197 - +0.1
5,750,250 + +0.1
5,750,251 - +2.4
5,750,781 + PP_5045 0.46 +0.5
5,750,782 - -1.1
5,750,782 - PP_5045 0.46 -3.3
5,750,782 - PP_5045 0.46 -2.8
5,750,782 - PP_5045 0.46 -2.9
5,750,782 - PP_5045 0.46 +0.1
5,750,846 + PP_5045 0.51 +0.1
5,750,847 - PP_5045 0.51 +0.8
5,750,881 - PP_5045 0.53 -3.4
5,750,973 + PP_5045 0.59 -0.2
5,750,973 + PP_5045 0.59 -0.5
5,751,079 - PP_5045 0.67 -1.1
5,751,178 - PP_5045 0.74 -2.4
5,751,178 - PP_5045 0.74 -3.1
5,751,320 + PP_5045 0.83 +0.1
5,751,568 - +1.5
5,751,610 - -0.9
5,751,661 + -2.1
5,751,662 - -3.2
5,751,662 - -0.4
5,751,662 - -2.8
5,751,662 - +1.1
5,751,723 - +1.0
5,751,772 - -0.7
5,751,804 + -2.4
5,751,835 + -0.9
5,751,836 - +0.5
5,751,836 - -0.9
5,751,892 - -1.7
5,751,892 - -3.1
5,752,013 + -2.4

Or see this region's nucleotide sequence