Strain Fitness in Pseudomonas putida KT2440 around PP_4639

Experiment: Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPP_4638 and PP_4639 overlap by 41 nucleotidesPP_4639 and PP_4640 are separated by 83 nucleotidesPP_4640 and PP_4641 are separated by 17 nucleotides PP_4638: PP_4638 - Methylenetetrahydrofolate reductase, at 5,261,828 to 5,263,315 _4638 PP_4639: PP_4639 - P-loop guanosine triphosphatase-dependent zinc chaperone, at 5,263,275 to 5,264,246 _4639 PP_4640: PP_4640 - conserved protein of unknown function, at 5,264,330 to 5,264,527 _4640 PP_4641: PP_4641 - putative transporter, at 5,264,545 to 5,266,611 _4641 Position (kb) 5263 5264 5265Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 5262.305 kb on + strand, within PP_4638at 5262.305 kb on + strand, within PP_4638at 5262.305 kb on + strand, within PP_4638at 5262.394 kb on - strand, within PP_4638at 5262.394 kb on - strand, within PP_4638at 5262.592 kb on + strand, within PP_4638at 5262.598 kb on + strand, within PP_4638at 5262.599 kb on - strand, within PP_4638at 5262.683 kb on + strand, within PP_4638at 5262.843 kb on - strand, within PP_4638at 5263.040 kb on + strand, within PP_4638at 5263.040 kb on + strand, within PP_4638at 5263.040 kb on + strand, within PP_4638at 5263.040 kb on + strand, within PP_4638at 5263.040 kb on + strand, within PP_4638at 5263.040 kb on + strand, within PP_4638at 5263.040 kb on + strand, within PP_4638at 5263.041 kb on - strand, within PP_4638at 5263.041 kb on - strand, within PP_4638at 5263.041 kb on - strand, within PP_4638at 5263.041 kb on - strand, within PP_4638at 5263.041 kb on - strand, within PP_4638at 5263.041 kb on - strand, within PP_4638at 5263.041 kb on - strand, within PP_4638at 5263.041 kb on - strand, within PP_4638at 5263.041 kb on - strand, within PP_4638at 5263.042 kb on + strand, within PP_4638at 5263.042 kb on + strand, within PP_4638at 5263.042 kb on + strand, within PP_4638at 5263.042 kb on + strand, within PP_4638at 5263.043 kb on - strand, within PP_4638at 5263.043 kb on - strand, within PP_4638at 5263.043 kb on - strand, within PP_4638at 5263.043 kb on - strand, within PP_4638at 5263.400 kb on - strand, within PP_4639at 5263.400 kb on - strand, within PP_4639at 5263.465 kb on + strand, within PP_4639at 5263.465 kb on + strand, within PP_4639at 5263.465 kb on + strand, within PP_4639at 5263.662 kb on + strand, within PP_4639at 5263.715 kb on + strand, within PP_4639at 5263.715 kb on + strand, within PP_4639at 5263.716 kb on - strand, within PP_4639at 5263.716 kb on - strand, within PP_4639at 5263.716 kb on - strand, within PP_4639at 5263.716 kb on - strand, within PP_4639at 5263.888 kb on + strand, within PP_4639at 5263.888 kb on + strand, within PP_4639at 5263.888 kb on + strand, within PP_4639at 5263.888 kb on + strand, within PP_4639at 5263.888 kb on + strand, within PP_4639at 5263.889 kb on - strand, within PP_4639at 5263.889 kb on - strand, within PP_4639at 5264.017 kb on + strand, within PP_4639at 5264.018 kb on - strand, within PP_4639at 5264.018 kb on - strand, within PP_4639at 5264.018 kb on - strand, within PP_4639at 5264.055 kb on + strand, within PP_4639at 5264.055 kb on + strand, within PP_4639at 5264.055 kb on + strand, within PP_4639at 5264.055 kb on + strand, within PP_4639at 5264.055 kb on + strand, within PP_4639at 5264.056 kb on - strand, within PP_4639at 5264.056 kb on - strand, within PP_4639at 5264.056 kb on - strand, within PP_4639at 5264.182 kb on + strandat 5264.182 kb on + strandat 5264.182 kb on + strandat 5264.183 kb on - strandat 5264.183 kb on - strandat 5264.183 kb on - strandat 5264.183 kb on - strandat 5264.183 kb on - strandat 5264.183 kb on - strandat 5264.314 kb on + strandat 5264.315 kb on - strandat 5264.361 kb on + strand, within PP_4640at 5264.361 kb on + strand, within PP_4640at 5264.397 kb on + strand, within PP_4640at 5264.397 kb on + strand, within PP_4640at 5264.397 kb on + strand, within PP_4640at 5264.397 kb on + strand, within PP_4640at 5264.398 kb on - strand, within PP_4640at 5264.398 kb on - strand, within PP_4640at 5264.445 kb on + strand, within PP_4640at 5264.445 kb on + strand, within PP_4640at 5264.445 kb on + strand, within PP_4640at 5264.445 kb on + strand, within PP_4640at 5264.445 kb on + strand, within PP_4640at 5264.445 kb on + strand, within PP_4640at 5264.446 kb on - strand, within PP_4640at 5264.455 kb on - strand, within PP_4640at 5264.497 kb on - strand, within PP_4640at 5264.546 kb on + strandat 5264.687 kb on + strandat 5264.687 kb on + strandat 5264.741 kb on - strandat 5264.768 kb on + strand, within PP_4641at 5264.768 kb on + strand, within PP_4641at 5264.768 kb on + strand, within PP_4641at 5264.769 kb on - strand, within PP_4641at 5264.769 kb on - strand, within PP_4641at 5264.857 kb on + strand, within PP_4641at 5264.886 kb on - strand, within PP_4641at 5264.886 kb on - strand, within PP_4641at 5265.017 kb on + strand, within PP_4641at 5265.017 kb on + strand, within PP_4641at 5265.018 kb on - strand, within PP_4641at 5265.026 kb on + strand, within PP_4641at 5265.027 kb on - strand, within PP_4641at 5265.204 kb on - strand, within PP_4641

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs
remove
5,262,305 + PP_4638 0.32 -0.8
5,262,305 + PP_4638 0.32 -2.1
5,262,305 + PP_4638 0.32 -2.2
5,262,394 - PP_4638 0.38 -0.2
5,262,394 - PP_4638 0.38 -2.1
5,262,592 + PP_4638 0.51 +0.2
5,262,598 + PP_4638 0.52 +1.8
5,262,599 - PP_4638 0.52 +0.4
5,262,683 + PP_4638 0.57 +1.2
5,262,843 - PP_4638 0.68 -2.3
5,263,040 + PP_4638 0.81 -0.1
5,263,040 + PP_4638 0.81 +1.4
5,263,040 + PP_4638 0.81 +0.6
5,263,040 + PP_4638 0.81 -3.3
5,263,040 + PP_4638 0.81 -0.6
5,263,040 + PP_4638 0.81 -0.1
5,263,040 + PP_4638 0.81 -3.8
5,263,041 - PP_4638 0.82 -2.3
5,263,041 - PP_4638 0.82 -3.6
5,263,041 - PP_4638 0.82 +1.8
5,263,041 - PP_4638 0.82 -2.8
5,263,041 - PP_4638 0.82 +1.2
5,263,041 - PP_4638 0.82 +1.2
5,263,041 - PP_4638 0.82 +0.5
5,263,041 - PP_4638 0.82 -0.4
5,263,041 - PP_4638 0.82 +1.3
5,263,042 + PP_4638 0.82 -2.5
5,263,042 + PP_4638 0.82 +0.4
5,263,042 + PP_4638 0.82 +0.7
5,263,042 + PP_4638 0.82 +0.4
5,263,043 - PP_4638 0.82 +0.4
5,263,043 - PP_4638 0.82 +0.8
5,263,043 - PP_4638 0.82 -0.8
5,263,043 - PP_4638 0.82 +0.7
5,263,400 - PP_4639 0.13 -0.1
5,263,400 - PP_4639 0.13 +0.4
5,263,465 + PP_4639 0.20 -0.2
5,263,465 + PP_4639 0.20 +0.4
5,263,465 + PP_4639 0.20 -1.7
5,263,662 + PP_4639 0.40 +1.1
5,263,715 + PP_4639 0.45 +0.9
5,263,715 + PP_4639 0.45 -1.2
5,263,716 - PP_4639 0.45 -0.1
5,263,716 - PP_4639 0.45 -0.4
5,263,716 - PP_4639 0.45 -1.4
5,263,716 - PP_4639 0.45 -1.3
5,263,888 + PP_4639 0.63 -0.1
5,263,888 + PP_4639 0.63 -2.0
5,263,888 + PP_4639 0.63 +0.6
5,263,888 + PP_4639 0.63 +0.7
5,263,888 + PP_4639 0.63 -0.9
5,263,889 - PP_4639 0.63 -2.4
5,263,889 - PP_4639 0.63 -3.2
5,264,017 + PP_4639 0.76 -0.7
5,264,018 - PP_4639 0.76 -2.2
5,264,018 - PP_4639 0.76 +1.2
5,264,018 - PP_4639 0.76 +0.6
5,264,055 + PP_4639 0.80 -0.8
5,264,055 + PP_4639 0.80 -4.0
5,264,055 + PP_4639 0.80 -3.0
5,264,055 + PP_4639 0.80 -1.2
5,264,055 + PP_4639 0.80 +0.5
5,264,056 - PP_4639 0.80 -0.9
5,264,056 - PP_4639 0.80 -0.3
5,264,056 - PP_4639 0.80 -2.7
5,264,182 + +0.8
5,264,182 + +1.6
5,264,182 + -1.5
5,264,183 - -3.3
5,264,183 - +1.2
5,264,183 - +1.0
5,264,183 - -0.2
5,264,183 - +1.5
5,264,183 - +0.5
5,264,314 + -0.9
5,264,315 - -3.6
5,264,361 + PP_4640 0.16 -0.0
5,264,361 + PP_4640 0.16 -4.6
5,264,397 + PP_4640 0.34 +0.1
5,264,397 + PP_4640 0.34 +0.8
5,264,397 + PP_4640 0.34 +0.2
5,264,397 + PP_4640 0.34 +1.0
5,264,398 - PP_4640 0.34 -1.6
5,264,398 - PP_4640 0.34 -4.3
5,264,445 + PP_4640 0.58 -3.8
5,264,445 + PP_4640 0.58 -0.6
5,264,445 + PP_4640 0.58 +0.8
5,264,445 + PP_4640 0.58 +0.4
5,264,445 + PP_4640 0.58 -0.5
5,264,445 + PP_4640 0.58 +0.7
5,264,446 - PP_4640 0.59 -2.2
5,264,455 - PP_4640 0.63 -0.4
5,264,497 - PP_4640 0.84 -0.3
5,264,546 + -2.9
5,264,687 + -3.2
5,264,687 + -0.0
5,264,741 - -0.9
5,264,768 + PP_4641 0.11 +0.5
5,264,768 + PP_4641 0.11 -3.5
5,264,768 + PP_4641 0.11 +0.8
5,264,769 - PP_4641 0.11 -0.8
5,264,769 - PP_4641 0.11 +0.5
5,264,857 + PP_4641 0.15 +1.5
5,264,886 - PP_4641 0.16 -2.6
5,264,886 - PP_4641 0.16 +1.1
5,265,017 + PP_4641 0.23 -1.9
5,265,017 + PP_4641 0.23 +0.5
5,265,018 - PP_4641 0.23 +0.5
5,265,026 + PP_4641 0.23 -0.8
5,265,027 - PP_4641 0.23 +1.8
5,265,204 - PP_4641 0.32 -0.6

Or see this region's nucleotide sequence