Strain Fitness in Pseudomonas putida KT2440 around PP_1006

Experiment: Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs
1,144,478	+		PP_1004	0.50	-3.4
1,144,479	-		PP_1004	0.50	+1.2
1,144,630	+		PP_1004	0.86	+0.5
1,144,631	-		PP_1004	0.87	-0.6
1,144,631	-		PP_1004	0.87	+1.9
1,144,677	+				+0.0
1,144,698	+				-1.0
1,144,698	+				-0.5
1,144,698	+				+1.9
1,144,699	-				-2.8
1,144,699	-				-4.7
1,144,699	-				+1.2
1,144,765	+				+1.2
1,145,190	+		PP_1005	0.76	-3.7
1,145,190	+		PP_1005	0.76	+1.7
1,145,191	-		PP_1005	0.76	-3.4
1,145,191	-		PP_1005	0.76	+0.9
1,145,191	-		PP_1005	0.76	-2.5
1,145,191	-		PP_1005	0.76	+0.3
1,145,191	-		PP_1005	0.76	+1.4
1,145,194	+		PP_1005	0.76	+0.9
1,145,195	-		PP_1005	0.77	+1.3
1,145,195	-		PP_1005	0.77	+0.4
1,145,361	-				+0.2
1,145,364	+				-2.3
1,145,365	-				+0.9
1,145,365	-				-0.4
1,145,365	-				-0.4
1,145,407	-				+1.6
1,145,407	-				+0.3
1,145,467	+				-0.4
1,145,498	-				-3.7
1,145,498	-				+0.5
1,145,575	-				-1.0
1,145,602	-				-0.2
1,145,602	-				-0.0
1,145,622	+				-4.3
1,145,623	-				+0.0
1,145,623	-				-0.9
1,145,623	-				+0.6
1,145,623	-				-0.3
1,145,623	-				-0.8
1,145,661	+				+0.6
1,145,661	+				-0.1
1,145,661	+				+1.5
1,145,661	+				-1.1
1,145,661	+				-3.4
1,145,662	-				-0.3
1,145,662	-				-3.2
1,145,662	-				+1.3
1,145,662	-				+0.3
1,145,688	+				-0.4
1,145,689	-				+1.6
1,145,713	+				-1.8
1,145,713	+				+1.0
1,145,714	-				-2.6
1,145,731	-				-4.6
1,145,731	-				-1.3
1,145,793	+		PP_1006	0.12	-0.1
1,145,793	+		PP_1006	0.12	+0.8
1,145,794	-		PP_1006	0.12	+0.9
1,145,822	+		PP_1006	0.13	-0.1
1,145,822	+		PP_1006	0.13	+1.3
1,145,822	+		PP_1006	0.13	-0.3
1,145,822	+		PP_1006	0.13	-2.7
1,145,880	+		PP_1006	0.16	-1.0
1,145,880	+		PP_1006	0.16	-0.4
1,145,880	+		PP_1006	0.16	-1.2
1,145,880	+		PP_1006	0.16	+1.3
1,145,880	+		PP_1006	0.16	-3.3
1,145,880	+		PP_1006	0.16	+0.7
1,145,880	+		PP_1006	0.16	-1.9
1,145,880	+		PP_1006	0.16	+2.1
1,145,881	-		PP_1006	0.16	+0.1
1,145,881	-		PP_1006	0.16	-0.6
1,145,881	-		PP_1006	0.16	+0.9
1,145,881	-		PP_1006	0.16	+0.8
1,145,881	-		PP_1006	0.16	+1.0
1,145,881	-		PP_1006	0.16	+0.6
1,145,881	-		PP_1006	0.16	+1.6
1,145,881	-		PP_1006	0.16	-0.4
1,145,886	+		PP_1006	0.16	+0.4
1,145,886	+		PP_1006	0.16	+1.0
1,145,886	+		PP_1006	0.16	-3.7
1,145,887	-		PP_1006	0.16	+0.8
1,145,887	-		PP_1006	0.16	+1.3
1,145,907	+		PP_1006	0.17	+0.3
1,145,907	+		PP_1006	0.17	-2.4
1,146,054	+		PP_1006	0.22	+1.1
1,146,054	+		PP_1006	0.22	+1.0
1,146,063	+		PP_1006	0.23	+0.2
1,146,063	+		PP_1006	0.23	+0.3
1,146,064	-		PP_1006	0.23	+1.1
1,146,064	-		PP_1006	0.23	-0.2
1,146,148	+		PP_1006	0.26	-4.6
1,146,149	-		PP_1006	0.26	+1.3
1,146,198	+		PP_1006	0.28	+2.1
1,146,198	+		PP_1006	0.28	+1.5
1,146,198	+		PP_1006	0.28	-3.6
1,146,198	+		PP_1006	0.28	-0.8
1,146,198	+		PP_1006	0.28	-2.3
1,146,199	-		PP_1006	0.28	+1.2
1,146,199	-		PP_1006	0.28	+0.5
1,146,199	-		PP_1006	0.28	+0.0
1,146,199	-		PP_1006	0.28	-0.3
1,146,199	-		PP_1006	0.28	+1.8
1,146,237	+		PP_1006	0.29	+0.0
1,146,238	-		PP_1006	0.30	+0.5
1,146,238	-		PP_1006	0.30	+1.9
1,146,238	-		PP_1006	0.30	+0.8
1,146,255	+		PP_1006	0.30	-0.5
1,146,255	+		PP_1006	0.30	-0.6
1,146,256	-		PP_1006	0.30	-3.0
1,146,256	-		PP_1006	0.30	+1.7
1,146,256	-		PP_1006	0.30	-0.9
1,146,274	-		PP_1006	0.31	-3.8
1,146,274	-		PP_1006	0.31	+0.3
1,146,471	+		PP_1006	0.39	-3.7
1,146,471	+		PP_1006	0.39	+0.4
1,146,471	+		PP_1006	0.39	-0.1
1,146,472	-		PP_1006	0.39	+0.2
1,146,547	+		PP_1006	0.41	-0.2
1,146,547	+		PP_1006	0.41	-0.5
1,146,547	+		PP_1006	0.41	+1.2
1,146,547	+		PP_1006	0.41	+0.6
1,146,548	-		PP_1006	0.41	-0.9
1,146,548	-		PP_1006	0.41	-0.3
1,146,548	-		PP_1006	0.41	+0.0
1,146,554	-		PP_1006	0.42	-3.2
1,146,628	-		PP_1006	0.45	+0.1
1,146,631	+		PP_1006	0.45	+0.8
1,146,705	+		PP_1006	0.48	-0.6
1,146,705	+		PP_1006	0.48	-0.2
1,146,706	-		PP_1006	0.48	-1.5
1,146,706	-		PP_1006	0.48	-3.0
1,146,706	-		PP_1006	0.48	+0.3
1,146,706	-		PP_1006	0.48	+1.1
1,146,709	+		PP_1006	0.48	-0.5
1,146,710	-		PP_1006	0.48	+1.9
1,146,750	+		PP_1006	0.49	+1.6
1,146,751	-		PP_1006	0.49	-0.4
1,146,751	-		PP_1006	0.49	+0.8
1,146,751	-		PP_1006	0.49	-1.2
1,146,751	-		PP_1006	0.49	+0.3
1,146,751	-		PP_1006	0.49	+1.3
1,146,751	-		PP_1006	0.49	-0.8
1,146,763	+		PP_1006	0.50	+0.3
1,146,764	-		PP_1006	0.50	+0.3
1,146,764	-		PP_1006	0.50	-0.1
1,146,790	-		PP_1006	0.51	+0.4
1,146,826	+		PP_1006	0.52	+0.7
1,146,827	-		PP_1006	0.52	+0.4
1,146,897	+		PP_1006	0.55	+1.0
1,146,975	+		PP_1006	0.58	-0.4
1,146,976	-		PP_1006	0.58	+0.1
1,147,288	-		PP_1006	0.70	+1.0
1,147,288	-		PP_1006	0.70	+2.5
1,147,320	+		PP_1006	0.71	-0.6
1,147,320	+		PP_1006	0.71	+1.0
1,147,321	-		PP_1006	0.71	-4.1
1,147,321	-		PP_1006	0.71	+1.5
1,147,380	+		PP_1006	0.74	+1.5
1,147,381	-		PP_1006	0.74	-0.7
1,147,381	-		PP_1006	0.74	+0.4
1,147,401	+		PP_1006	0.74	+0.2
1,147,410	+		PP_1006	0.75	+1.8
1,147,410	+		PP_1006	0.75	+0.3
1,147,471	+		PP_1006	0.77	-1.2
1,147,485	+		PP_1006	0.78	-0.3
1,147,486	-		PP_1006	0.78	+0.4
1,147,540	-		PP_1006	0.80	-0.7
1,147,558	+		PP_1006	0.80	+0.6
1,147,558	+		PP_1006	0.80	+0.1
1,147,703	+		PP_1006	0.86	-3.8
1,147,704	-		PP_1006	0.86	+0.1
1,147,793	+		PP_1006	0.90	+1.3
1,147,793	+		PP_1006	0.90	-1.1
1,147,794	-		PP_1006	0.90	+0.4
1,147,794	-		PP_1006	0.90	+0.0
1,147,794	-		PP_1006	0.90	-2.6
1,148,283	+				+2.7
1,148,283	+				+0.5
1,148,283	+				+0.1
1,148,284	-				+1.2
1,148,287	+				+0.8
1,148,287	+				+0.7
1,148,344	-		PP_1007	0.15	-0.2
1,148,347	-		PP_1007	0.15	+1.8
1,148,354	+		PP_1007	0.16	+2.2
1,148,355	-		PP_1007	0.16	-2.5
1,148,550	-		PP_1007	0.34	+1.1
1,148,571	+		PP_1007	0.36	-3.8
1,148,571	+		PP_1007	0.36	-0.1
1,148,571	+		PP_1007	0.36	-1.7
1,148,678	+		PP_1007	0.46	+0.8
1,148,678	+		PP_1007	0.46	+0.3
1,148,678	+		PP_1007	0.46	-1.5
1,148,678	+		PP_1007	0.46	+0.8
1,148,679	-		PP_1007	0.46	+0.9
1,148,794	+		PP_1007	0.57	+0.2
1,148,795	-		PP_1007	0.57	+0.4
1,148,795	-		PP_1007	0.57	-0.7
1,148,795	-		PP_1007	0.57	-1.1
1,148,795	-		PP_1007	0.57	-3.8
1,148,956	+		PP_1007	0.73	-1.1
1,148,956	+		PP_1007	0.73	-1.4
1,148,985	+		PP_1007	0.75	-3.3
1,148,985	+		PP_1007	0.75	+0.1
1,148,986	-		PP_1007	0.75	-0.4
1,148,986	-		PP_1007	0.75	+0.6
1,148,986	-		PP_1007	0.75	+1.3
1,148,986	-		PP_1007	0.75	-3.4
1,148,986	-		PP_1007	0.75	-0.1