Experiment: Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0781 and PP_0782 are separated by 472 nucleotides PP_0782 and PP_0784 are separated by 342 nucleotides
PP_0781: PP_0781 - conserved protein of unknown function, at 898,117 to 898,452
_0781
PP_0782: PP_0782 - conserved protein of unknown function, at 898,925 to 899,548
_0782
PP_0784: PP_0784 - conserved protein of unknown function, at 899,891 to 900,508
_0784
Position (kb) 898
899
900 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 897.979 kb on - strand at 898.329 kb on - strand, within PP_0781 at 898.329 kb on - strand, within PP_0781 at 898.329 kb on - strand, within PP_0781 at 898.483 kb on + strand at 898.901 kb on - strand at 898.935 kb on + strand at 898.935 kb on + strand at 899.165 kb on + strand, within PP_0782 at 899.165 kb on + strand, within PP_0782 at 899.295 kb on + strand, within PP_0782 at 899.296 kb on - strand, within PP_0782 at 899.299 kb on + strand, within PP_0782 at 899.392 kb on + strand, within PP_0782 at 899.393 kb on - strand, within PP_0782 at 899.409 kb on - strand, within PP_0782 at 899.522 kb on + strand at 899.523 kb on - strand at 899.547 kb on - strand at 899.600 kb on + strand at 899.601 kb on - strand at 899.778 kb on - strand at 899.781 kb on + strand at 899.781 kb on + strand at 899.871 kb on - strand at 899.916 kb on + strand at 900.008 kb on + strand, within PP_0784 at 900.036 kb on - strand, within PP_0784 at 900.128 kb on - strand, within PP_0784 at 900.131 kb on + strand, within PP_0784 at 900.215 kb on - strand, within PP_0784 at 900.323 kb on - strand, within PP_0784 at 900.357 kb on + strand, within PP_0784 at 900.358 kb on - strand, within PP_0784 at 900.453 kb on + strand at 900.453 kb on + strand at 900.453 kb on + strand at 900.453 kb on + strand at 900.454 kb on - strand at 900.454 kb on - strand at 900.454 kb on - strand at 900.454 kb on - strand at 900.456 kb on + strand at 900.488 kb on + strand at 900.489 kb on - strand at 900.507 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs remove 897,979 - +0.1 898,329 - PP_0781 0.63 +0.7 898,329 - PP_0781 0.63 -0.1 898,329 - PP_0781 0.63 -0.2 898,483 + +0.9 898,901 - -2.0 898,935 + -3.8 898,935 + -3.4 899,165 + PP_0782 0.38 -3.1 899,165 + PP_0782 0.38 -0.2 899,295 + PP_0782 0.59 -0.7 899,296 - PP_0782 0.59 +0.4 899,299 + PP_0782 0.60 -1.8 899,392 + PP_0782 0.75 -1.6 899,393 - PP_0782 0.75 -3.0 899,409 - PP_0782 0.78 -3.2 899,522 + +0.0 899,523 - +0.9 899,547 - -0.7 899,600 + +0.1 899,601 - -0.1 899,778 - -0.9 899,781 + +0.9 899,781 + +0.2 899,871 - -0.8 899,916 + -0.8 900,008 + PP_0784 0.19 -1.4 900,036 - PP_0784 0.23 +3.1 900,128 - PP_0784 0.38 -3.3 900,131 + PP_0784 0.39 +1.4 900,215 - PP_0784 0.52 +0.2 900,323 - PP_0784 0.70 -4.5 900,357 + PP_0784 0.75 -1.9 900,358 - PP_0784 0.76 +0.2 900,453 + -1.7 900,453 + +0.9 900,453 + -0.0 900,453 + -0.7 900,454 - -0.2 900,454 - +0.6 900,454 - -0.3 900,454 - +0.1 900,456 + -0.4 900,488 + +1.3 900,489 - -0.6 900,507 - +1.7
Or see this region's nucleotide sequence