Strain Fitness in Pseudomonas putida KT2440 around PP_0726

Experiment: Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0725 and PP_0726 are separated by 468 nucleotidesPP_0726 and PP_0727 overlap by 4 nucleotidesPP_0727 and PP_0728 overlap by 4 nucleotides PP_0725: PP_0725 - conserved hypothetical TPR repeat protein, at 841,328 to 843,049 _0725 PP_0726: PP_0726 - Transferase, at 843,518 to 844,243 _0726 PP_0727: PP_0727 - conserved protein of unknown function, at 844,240 to 844,842 _0727 PP_0728: PP_0728 - conserved protein of unknown function, at 844,839 to 846,008 _0728 Position (kb) 843 844 845Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 842.538 kb on - strand, within PP_0725at 842.622 kb on - strand, within PP_0725at 842.622 kb on - strand, within PP_0725at 842.635 kb on - strand, within PP_0725at 842.635 kb on - strand, within PP_0725at 842.653 kb on - strand, within PP_0725at 842.833 kb on - strand, within PP_0725at 842.833 kb on - strand, within PP_0725at 842.833 kb on - strand, within PP_0725at 842.833 kb on - strand, within PP_0725at 842.894 kb on - strandat 842.896 kb on - strandat 842.896 kb on - strandat 842.923 kb on - strandat 842.923 kb on - strandat 842.923 kb on - strandat 843.037 kb on - strandat 843.037 kb on - strandat 843.050 kb on - strandat 843.060 kb on - strandat 843.060 kb on - strandat 843.060 kb on - strandat 843.062 kb on - strandat 843.062 kb on - strandat 843.062 kb on - strandat 843.134 kb on + strandat 843.134 kb on + strandat 843.156 kb on - strandat 843.219 kb on + strandat 843.227 kb on - strandat 843.241 kb on - strandat 843.275 kb on + strandat 843.275 kb on + strandat 843.275 kb on + strandat 843.276 kb on - strandat 843.276 kb on - strandat 843.276 kb on - strandat 843.276 kb on - strandat 843.288 kb on + strandat 843.312 kb on + strandat 843.312 kb on + strandat 843.312 kb on + strandat 843.312 kb on + strandat 843.312 kb on + strandat 843.312 kb on + strandat 843.312 kb on + strandat 843.312 kb on + strandat 843.313 kb on - strandat 843.313 kb on - strandat 843.313 kb on - strandat 843.313 kb on - strandat 843.313 kb on - strandat 843.313 kb on - strandat 843.314 kb on + strandat 843.355 kb on - strandat 843.355 kb on - strandat 843.459 kb on - strandat 843.480 kb on + strandat 843.492 kb on + strandat 843.531 kb on + strandat 843.543 kb on + strandat 843.543 kb on + strandat 843.543 kb on + strandat 843.543 kb on + strandat 843.545 kb on + strandat 843.636 kb on - strand, within PP_0726at 843.741 kb on + strand, within PP_0726at 843.741 kb on + strand, within PP_0726at 843.741 kb on + strand, within PP_0726at 843.742 kb on - strandat 843.742 kb on - strand, within PP_0726at 843.742 kb on - strand, within PP_0726at 843.784 kb on + strand, within PP_0726at 843.806 kb on + strand, within PP_0726at 843.879 kb on + strand, within PP_0726at 843.892 kb on + strand, within PP_0726at 843.907 kb on + strand, within PP_0726at 843.907 kb on + strand, within PP_0726at 843.907 kb on + strand, within PP_0726at 843.908 kb on - strand, within PP_0726at 843.911 kb on + strand, within PP_0726at 843.911 kb on + strand, within PP_0726at 843.911 kb on + strand, within PP_0726at 843.912 kb on - strand, within PP_0726at 843.912 kb on - strand, within PP_0726at 843.920 kb on + strand, within PP_0726at 843.920 kb on + strand, within PP_0726at 843.920 kb on + strand, within PP_0726at 843.923 kb on + strand, within PP_0726at 843.923 kb on + strand, within PP_0726at 843.924 kb on - strand, within PP_0726at 843.924 kb on - strand, within PP_0726at 843.924 kb on - strand, within PP_0726at 843.924 kb on - strand, within PP_0726at 843.951 kb on + strand, within PP_0726at 843.951 kb on + strand, within PP_0726at 843.951 kb on + strand, within PP_0726at 843.952 kb on - strand, within PP_0726at 843.955 kb on + strand, within PP_0726at 843.955 kb on + strand, within PP_0726at 843.955 kb on + strand, within PP_0726at 843.955 kb on + strand, within PP_0726at 843.955 kb on + strand, within PP_0726at 843.956 kb on - strand, within PP_0726at 843.956 kb on - strand, within PP_0726at 843.956 kb on - strand, within PP_0726at 843.998 kb on + strand, within PP_0726at 843.998 kb on + strand, within PP_0726at 844.039 kb on - strand, within PP_0726at 844.142 kb on + strand, within PP_0726at 844.143 kb on - strand, within PP_0726at 844.143 kb on - strand, within PP_0726at 844.159 kb on + strand, within PP_0726at 844.159 kb on + strand, within PP_0726at 844.166 kb on + strand, within PP_0726at 844.167 kb on - strand, within PP_0726at 844.202 kb on + strandat 844.202 kb on + strandat 844.298 kb on - strandat 844.329 kb on + strand, within PP_0727at 844.349 kb on + strand, within PP_0727at 844.350 kb on - strand, within PP_0727at 844.350 kb on - strand, within PP_0727at 844.350 kb on - strand, within PP_0727at 844.384 kb on + strand, within PP_0727at 844.385 kb on - strand, within PP_0727at 844.387 kb on + strand, within PP_0727at 844.388 kb on - strand, within PP_0727at 844.388 kb on - strand, within PP_0727at 844.422 kb on - strand, within PP_0727at 844.431 kb on - strand, within PP_0727at 844.431 kb on - strand, within PP_0727at 844.480 kb on + strand, within PP_0727at 844.480 kb on + strand, within PP_0727at 844.480 kb on + strand, within PP_0727at 844.481 kb on - strandat 844.481 kb on - strand, within PP_0727at 844.481 kb on - strand, within PP_0727at 844.481 kb on - strand, within PP_0727at 844.481 kb on - strand, within PP_0727at 844.481 kb on - strand, within PP_0727at 844.528 kb on + strand, within PP_0727at 844.528 kb on + strand, within PP_0727at 844.529 kb on - strand, within PP_0727at 844.547 kb on - strand, within PP_0727at 844.547 kb on - strand, within PP_0727at 844.657 kb on - strand, within PP_0727at 844.691 kb on - strand, within PP_0727at 844.725 kb on - strand, within PP_0727at 844.751 kb on - strand, within PP_0727at 844.751 kb on - strand, within PP_0727at 844.855 kb on - strandat 844.855 kb on - strandat 844.855 kb on - strandat 844.856 kb on + strandat 844.899 kb on + strandat 844.900 kb on - strandat 844.931 kb on + strandat 844.970 kb on + strand, within PP_0728at 844.970 kb on + strand, within PP_0728at 844.970 kb on + strand, within PP_0728at 844.970 kb on + strand, within PP_0728at 844.971 kb on - strand, within PP_0728at 844.971 kb on - strand, within PP_0728at 844.971 kb on - strand, within PP_0728at 844.971 kb on - strand, within PP_0728at 845.076 kb on + strand, within PP_0728at 845.077 kb on - strand, within PP_0728at 845.077 kb on - strand, within PP_0728at 845.179 kb on - strand, within PP_0728at 845.217 kb on + strand, within PP_0728

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Per-strain Table

Position Strand Gene LocusTag Fraction Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs
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842,538 - PP_0725 0.70 -0.7
842,622 - PP_0725 0.75 -0.4
842,622 - PP_0725 0.75 +0.2
842,635 - PP_0725 0.76 -1.3
842,635 - PP_0725 0.76 -0.4
842,653 - PP_0725 0.77 -2.3
842,833 - PP_0725 0.87 -1.4
842,833 - PP_0725 0.87 -2.2
842,833 - PP_0725 0.87 -0.7
842,833 - PP_0725 0.87 -0.2
842,894 - -1.5
842,896 - +0.2
842,896 - -0.2
842,923 - -0.4
842,923 - -1.2
842,923 - -2.2
843,037 - -2.2
843,037 - -2.8
843,050 - +1.0
843,060 - +0.5
843,060 - -1.4
843,060 - -4.0
843,062 - +0.2
843,062 - -1.3
843,062 - +0.5
843,134 + +0.4
843,134 + -1.3
843,156 - +0.4
843,219 + -0.5
843,227 - -2.0
843,241 - +0.9
843,275 + +0.6
843,275 + -1.1
843,275 + +0.2
843,276 - +0.9
843,276 - -3.2
843,276 - +0.1
843,276 - -3.2
843,288 + +1.0
843,312 + +0.8
843,312 + -0.0
843,312 + -2.2
843,312 + +1.9
843,312 + +0.4
843,312 + -1.3
843,312 + -0.4
843,312 + -0.8
843,313 - +0.1
843,313 - -0.5
843,313 - -2.4
843,313 - -0.8
843,313 - -1.1
843,313 - -0.7
843,314 + -4.2
843,355 - -1.4
843,355 - -0.2
843,459 - +1.2
843,480 + -1.3
843,492 + +1.7
843,531 + -1.3
843,543 + +0.9
843,543 + -0.9
843,543 + -0.5
843,543 + +0.4
843,545 + -0.8
843,636 - PP_0726 0.16 +0.6
843,741 + PP_0726 0.31 -2.1
843,741 + PP_0726 0.31 -1.3
843,741 + PP_0726 0.31 -3.7
843,742 - +0.0
843,742 - PP_0726 0.31 -0.7
843,742 - PP_0726 0.31 -0.5
843,784 + PP_0726 0.37 -1.8
843,806 + PP_0726 0.40 -0.6
843,879 + PP_0726 0.50 -2.6
843,892 + PP_0726 0.52 -1.6
843,907 + PP_0726 0.54 +1.0
843,907 + PP_0726 0.54 -0.2
843,907 + PP_0726 0.54 +0.9
843,908 - PP_0726 0.54 -0.1
843,911 + PP_0726 0.54 -1.8
843,911 + PP_0726 0.54 -2.2
843,911 + PP_0726 0.54 -0.8
843,912 - PP_0726 0.54 -0.8
843,912 - PP_0726 0.54 -3.1
843,920 + PP_0726 0.55 +0.6
843,920 + PP_0726 0.55 +1.4
843,920 + PP_0726 0.55 -0.4
843,923 + PP_0726 0.56 +0.2
843,923 + PP_0726 0.56 -2.8
843,924 - PP_0726 0.56 +1.7
843,924 - PP_0726 0.56 +0.5
843,924 - PP_0726 0.56 -0.3
843,924 - PP_0726 0.56 +1.8
843,951 + PP_0726 0.60 -4.0
843,951 + PP_0726 0.60 +0.4
843,951 + PP_0726 0.60 +1.4
843,952 - PP_0726 0.60 -0.1
843,955 + PP_0726 0.60 -0.1
843,955 + PP_0726 0.60 -0.4
843,955 + PP_0726 0.60 +0.8
843,955 + PP_0726 0.60 -0.3
843,955 + PP_0726 0.60 -1.1
843,956 - PP_0726 0.60 -0.9
843,956 - PP_0726 0.60 +0.5
843,956 - PP_0726 0.60 +0.6
843,998 + PP_0726 0.66 -1.4
843,998 + PP_0726 0.66 +0.5
844,039 - PP_0726 0.72 +0.6
844,142 + PP_0726 0.86 -1.5
844,143 - PP_0726 0.86 -3.7
844,143 - PP_0726 0.86 -3.3
844,159 + PP_0726 0.88 -3.8
844,159 + PP_0726 0.88 +0.7
844,166 + PP_0726 0.89 -1.5
844,167 - PP_0726 0.89 -3.6
844,202 + -4.1
844,202 + -3.1
844,298 - -0.4
844,329 + PP_0727 0.15 -4.2
844,349 + PP_0727 0.18 +0.8
844,350 - PP_0727 0.18 +2.7
844,350 - PP_0727 0.18 +0.8
844,350 - PP_0727 0.18 +0.9
844,384 + PP_0727 0.24 +0.1
844,385 - PP_0727 0.24 +1.0
844,387 + PP_0727 0.24 -1.0
844,388 - PP_0727 0.25 -3.6
844,388 - PP_0727 0.25 -0.8
844,422 - PP_0727 0.30 +0.9
844,431 - PP_0727 0.32 -1.1
844,431 - PP_0727 0.32 +0.5
844,480 + PP_0727 0.40 -0.2
844,480 + PP_0727 0.40 +1.2
844,480 + PP_0727 0.40 -1.4
844,481 - +0.3
844,481 - PP_0727 0.40 -1.0
844,481 - PP_0727 0.40 -0.1
844,481 - PP_0727 0.40 -3.6
844,481 - PP_0727 0.40 -4.5
844,481 - PP_0727 0.40 +2.4
844,528 + PP_0727 0.48 -1.2
844,528 + PP_0727 0.48 +1.5
844,529 - PP_0727 0.48 +0.5
844,547 - PP_0727 0.51 +1.2
844,547 - PP_0727 0.51 -0.0
844,657 - PP_0727 0.69 -0.4
844,691 - PP_0727 0.75 +2.2
844,725 - PP_0727 0.80 -0.1
844,751 - PP_0727 0.85 +2.0
844,751 - PP_0727 0.85 +0.9
844,855 - -2.5
844,855 - +0.4
844,855 - -1.1
844,856 + +1.1
844,899 + -0.2
844,900 - +1.2
844,931 + -0.4
844,970 + PP_0728 0.11 +0.4
844,970 + PP_0728 0.11 -3.7
844,970 + PP_0728 0.11 -0.1
844,970 + PP_0728 0.11 +1.5
844,971 - PP_0728 0.11 +1.9
844,971 - PP_0728 0.11 +2.9
844,971 - PP_0728 0.11 +0.2
844,971 - PP_0728 0.11 -0.4
845,076 + PP_0728 0.20 +0.5
845,077 - PP_0728 0.20 +0.3
845,077 - PP_0728 0.20 +1.3
845,179 - PP_0728 0.29 -0.5
845,217 + PP_0728 0.32 +0.9

Or see this region's nucleotide sequence