Strain Fitness in Pseudomonas putida KT2440 around PP_0643

Experiment: Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_5452 and PP_0642 overlap by 11 nucleotidesPP_0642 and PP_0643 are separated by 31 nucleotidesPP_0643 and PP_0645 are separated by 167 nucleotidesPP_0645 and PP_0646 are separated by 250 nucleotides PP_5452: PP_5452 - protein of unknown function, at 753,744 to 753,926 _5452 PP_0642: PP_0642 - conserved membrane protein of unknown function, at 753,916 to 754,530 _0642 PP_0643: PP_0643 - protein of unknown function, at 754,562 to 754,744 _0643 PP_0645: PP_0645 - protein of unknown function, at 754,912 to 755,154 _0645 PP_0646: PP_0646 - conserved protein of unknown function, at 755,405 to 756,805 _0646 Position (kb) 754 755Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 753.624 kb on - strandat 753.759 kb on + strandat 753.813 kb on + strand, within PP_5452at 753.813 kb on + strand, within PP_5452at 753.813 kb on + strand, within PP_5452at 753.814 kb on - strand, within PP_5452at 753.814 kb on - strand, within PP_5452at 753.814 kb on - strand, within PP_5452at 753.814 kb on - strand, within PP_5452at 753.814 kb on - strand, within PP_5452at 753.814 kb on - strand, within PP_5452at 753.814 kb on - strand, within PP_5452at 753.827 kb on + strand, within PP_5452at 753.827 kb on + strand, within PP_5452at 753.915 kb on + strandat 753.915 kb on + strandat 753.915 kb on + strandat 753.941 kb on - strandat 753.959 kb on + strandat 753.959 kb on + strandat 753.959 kb on + strandat 754.210 kb on - strand, within PP_0642at 754.229 kb on + strand, within PP_0642at 754.432 kb on + strand, within PP_0642at 754.432 kb on + strand, within PP_0642at 754.432 kb on + strand, within PP_0642at 754.433 kb on - strand, within PP_0642at 754.664 kb on + strand, within PP_0643at 754.664 kb on + strand, within PP_0643at 754.665 kb on - strand, within PP_0643at 754.856 kb on + strandat 754.857 kb on - strandat 754.857 kb on - strandat 754.947 kb on + strand, within PP_0645at 754.947 kb on + strand, within PP_0645at 754.948 kb on - strand, within PP_0645at 754.948 kb on - strand, within PP_0645at 755.009 kb on + strand, within PP_0645at 755.009 kb on + strand, within PP_0645at 755.010 kb on - strand, within PP_0645at 755.010 kb on - strand, within PP_0645at 755.040 kb on + strand, within PP_0645at 755.041 kb on - strand, within PP_0645at 755.064 kb on + strand, within PP_0645at 755.104 kb on + strand, within PP_0645at 755.105 kb on - strand, within PP_0645at 755.105 kb on - strand, within PP_0645at 755.105 kb on - strand, within PP_0645at 755.123 kb on + strand, within PP_0645at 755.123 kb on + strand, within PP_0645at 755.123 kb on + strand, within PP_0645at 755.124 kb on - strand, within PP_0645at 755.196 kb on + strandat 755.197 kb on - strandat 755.197 kb on - strandat 755.197 kb on - strandat 755.197 kb on - strandat 755.197 kb on - strandat 755.197 kb on - strandat 755.201 kb on + strandat 755.201 kb on + strandat 755.232 kb on - strandat 755.266 kb on - strandat 755.266 kb on - strandat 755.281 kb on - strandat 755.281 kb on - strandat 755.291 kb on + strandat 755.291 kb on + strandat 755.292 kb on - strandat 755.297 kb on + strandat 755.298 kb on - strandat 755.298 kb on - strandat 755.298 kb on - strandat 755.359 kb on + strandat 755.359 kb on + strandat 755.359 kb on + strandat 755.359 kb on + strandat 755.359 kb on + strandat 755.359 kb on + strandat 755.360 kb on - strandat 755.360 kb on - strandat 755.360 kb on - strandat 755.360 kb on - strandat 755.366 kb on + strandat 755.366 kb on + strandat 755.367 kb on - strandat 755.382 kb on + strandat 755.382 kb on + strandat 755.382 kb on + strandat 755.439 kb on + strandat 755.439 kb on + strandat 755.439 kb on + strandat 755.440 kb on - strandat 755.440 kb on - strandat 755.631 kb on + strand, within PP_0646at 755.631 kb on + strand, within PP_0646at 755.631 kb on + strand, within PP_0646at 755.631 kb on + strand, within PP_0646at 755.632 kb on - strand, within PP_0646at 755.632 kb on - strand, within PP_0646

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Per-strain Table

Position Strand Gene LocusTag Fraction Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs
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753,624 - -0.1
753,759 + -1.4
753,813 + PP_5452 0.38 -2.4
753,813 + PP_5452 0.38 -0.1
753,813 + PP_5452 0.38 -1.6
753,814 - PP_5452 0.38 -3.7
753,814 - PP_5452 0.38 +0.0
753,814 - PP_5452 0.38 -0.3
753,814 - PP_5452 0.38 +1.4
753,814 - PP_5452 0.38 +1.6
753,814 - PP_5452 0.38 +0.1
753,814 - PP_5452 0.38 -1.0
753,827 + PP_5452 0.45 -0.1
753,827 + PP_5452 0.45 -0.3
753,915 + -4.1
753,915 + +2.0
753,915 + -1.8
753,941 - +2.9
753,959 + -0.7
753,959 + +0.7
753,959 + -1.8
754,210 - PP_0642 0.48 +1.1
754,229 + PP_0642 0.51 -0.2
754,432 + PP_0642 0.84 +0.2
754,432 + PP_0642 0.84 +0.3
754,432 + PP_0642 0.84 -2.4
754,433 - PP_0642 0.84 -4.4
754,664 + PP_0643 0.56 -0.6
754,664 + PP_0643 0.56 -1.0
754,665 - PP_0643 0.56 -3.5
754,856 + +1.7
754,857 - -1.5
754,857 - +0.5
754,947 + PP_0645 0.14 +1.5
754,947 + PP_0645 0.14 -1.4
754,948 - PP_0645 0.15 +1.0
754,948 - PP_0645 0.15 -4.0
755,009 + PP_0645 0.40 +1.7
755,009 + PP_0645 0.40 -0.5
755,010 - PP_0645 0.40 +1.2
755,010 - PP_0645 0.40 -0.2
755,040 + PP_0645 0.53 -2.7
755,041 - PP_0645 0.53 +0.1
755,064 + PP_0645 0.63 -0.5
755,104 + PP_0645 0.79 +0.7
755,105 - PP_0645 0.79 +0.1
755,105 - PP_0645 0.79 +0.9
755,105 - PP_0645 0.79 +1.6
755,123 + PP_0645 0.87 +0.2
755,123 + PP_0645 0.87 -0.9
755,123 + PP_0645 0.87 -0.5
755,124 - PP_0645 0.87 +0.5
755,196 + +0.2
755,197 - +1.3
755,197 - +0.7
755,197 - -0.6
755,197 - +0.5
755,197 - +0.9
755,197 - +0.5
755,201 + -2.4
755,201 + +0.9
755,232 - +1.2
755,266 - -0.1
755,266 - -1.2
755,281 - -2.4
755,281 - -1.1
755,291 + +0.2
755,291 + -0.7
755,292 - -3.0
755,297 + -3.0
755,298 - +1.0
755,298 - +0.1
755,298 - -0.2
755,359 + +0.0
755,359 + -2.0
755,359 + -0.1
755,359 + -0.2
755,359 + -0.7
755,359 + +0.5
755,360 - -0.9
755,360 - -1.1
755,360 - +0.2
755,360 - +0.3
755,366 + +0.2
755,366 + -0.8
755,367 - +2.1
755,382 + -3.7
755,382 + -3.9
755,382 + -3.2
755,439 + -0.2
755,439 + -3.0
755,439 + -1.9
755,440 - -0.9
755,440 - +0.8
755,631 + PP_0646 0.16 -1.0
755,631 + PP_0646 0.16 +0.1
755,631 + PP_0646 0.16 -1.2
755,631 + PP_0646 0.16 -1.0
755,632 - PP_0646 0.16 +2.0
755,632 - PP_0646 0.16 -4.4

Or see this region's nucleotide sequence