Experiment: Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0218 and PP_0219 are separated by 28 nucleotides PP_0219 and PP_0220 overlap by 11 nucleotides
PP_0218: PP_0218 - Sensory box protein, at 270,100 to 271,995
_0218
PP_0219: PP_0219 - L,D-methionine D-methionine ABC transporter - permease subunit, at 272,024 to 272,668
_0219
PP_0220: PP_0220 - methionine import ATP-binding protein metN2, at 272,658 to 273,767
_0220
Position (kb) 272
273 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 271.047 kb on + strand, within PP_0218 at 271.047 kb on + strand, within PP_0218 at 271.048 kb on - strand, within PP_0218 at 271.171 kb on + strand, within PP_0218 at 271.171 kb on + strand, within PP_0218 at 271.171 kb on + strand, within PP_0218 at 271.171 kb on + strand, within PP_0218 at 271.172 kb on - strand, within PP_0218 at 271.172 kb on - strand, within PP_0218 at 271.201 kb on + strand, within PP_0218 at 271.201 kb on + strand, within PP_0218 at 271.201 kb on + strand, within PP_0218 at 271.201 kb on + strand, within PP_0218 at 271.202 kb on - strand, within PP_0218 at 271.202 kb on - strand, within PP_0218 at 271.211 kb on - strand, within PP_0218 at 271.211 kb on - strand, within PP_0218 at 271.300 kb on + strand, within PP_0218 at 271.300 kb on + strand, within PP_0218 at 271.446 kb on + strand, within PP_0218 at 271.562 kb on - strand, within PP_0218 at 271.857 kb on + strand at 271.948 kb on + strand at 272.082 kb on - strand at 272.136 kb on + strand, within PP_0219 at 272.221 kb on + strand, within PP_0219 at 272.221 kb on + strand, within PP_0219 at 272.221 kb on + strand, within PP_0219 at 272.267 kb on + strand, within PP_0219 at 272.267 kb on + strand, within PP_0219 at 272.267 kb on + strand, within PP_0219 at 272.267 kb on + strand, within PP_0219 at 272.267 kb on + strand, within PP_0219 at 272.267 kb on + strand, within PP_0219 at 272.267 kb on + strand, within PP_0219 at 272.267 kb on + strand, within PP_0219 at 272.268 kb on - strand, within PP_0219 at 272.268 kb on - strand, within PP_0219 at 272.268 kb on - strand, within PP_0219 at 272.418 kb on + strand, within PP_0219 at 272.418 kb on + strand, within PP_0219 at 272.418 kb on + strand, within PP_0219 at 272.418 kb on + strand, within PP_0219 at 272.418 kb on + strand, within PP_0219 at 272.418 kb on + strand, within PP_0219 at 272.419 kb on - strand, within PP_0219 at 272.419 kb on - strand, within PP_0219 at 272.419 kb on - strand, within PP_0219 at 272.419 kb on - strand, within PP_0219 at 272.582 kb on + strand, within PP_0219 at 272.582 kb on + strand, within PP_0219 at 272.583 kb on - strand, within PP_0219 at 272.632 kb on + strand at 272.633 kb on - strand at 272.633 kb on - strand at 272.676 kb on + strand at 272.677 kb on - strand at 273.271 kb on + strand, within PP_0220 at 273.495 kb on + strand, within PP_0220 at 273.551 kb on + strand, within PP_0220 at 273.552 kb on - strand at 273.552 kb on - strand, within PP_0220 at 273.644 kb on - strand, within PP_0220
Per-strain Table
Position Strand Gene LocusTag Fraction Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs remove 271,047 + PP_0218 0.50 -1.3 271,047 + PP_0218 0.50 -3.1 271,048 - PP_0218 0.50 -0.7 271,171 + PP_0218 0.56 -0.3 271,171 + PP_0218 0.56 -2.7 271,171 + PP_0218 0.56 -1.3 271,171 + PP_0218 0.56 -1.5 271,172 - PP_0218 0.57 -1.8 271,172 - PP_0218 0.57 -3.3 271,201 + PP_0218 0.58 -2.5 271,201 + PP_0218 0.58 -1.3 271,201 + PP_0218 0.58 -3.1 271,201 + PP_0218 0.58 -2.2 271,202 - PP_0218 0.58 +0.1 271,202 - PP_0218 0.58 -0.9 271,211 - PP_0218 0.59 -2.5 271,211 - PP_0218 0.59 -0.6 271,300 + PP_0218 0.63 -2.3 271,300 + PP_0218 0.63 +0.6 271,446 + PP_0218 0.71 -1.1 271,562 - PP_0218 0.77 -0.6 271,857 + -3.5 271,948 + -2.7 272,082 - -3.4 272,136 + PP_0219 0.17 -0.1 272,221 + PP_0219 0.31 -2.2 272,221 + PP_0219 0.31 -2.4 272,221 + PP_0219 0.31 +0.5 272,267 + PP_0219 0.38 -4.1 272,267 + PP_0219 0.38 -0.9 272,267 + PP_0219 0.38 -0.5 272,267 + PP_0219 0.38 -2.7 272,267 + PP_0219 0.38 -3.2 272,267 + PP_0219 0.38 +0.6 272,267 + PP_0219 0.38 -1.7 272,267 + PP_0219 0.38 -4.3 272,268 - PP_0219 0.38 -0.2 272,268 - PP_0219 0.38 -0.9 272,268 - PP_0219 0.38 +0.3 272,418 + PP_0219 0.61 -0.9 272,418 + PP_0219 0.61 +0.7 272,418 + PP_0219 0.61 -0.1 272,418 + PP_0219 0.61 +0.5 272,418 + PP_0219 0.61 -2.7 272,418 + PP_0219 0.61 +1.7 272,419 - PP_0219 0.61 -4.1 272,419 - PP_0219 0.61 -1.0 272,419 - PP_0219 0.61 -0.6 272,419 - PP_0219 0.61 -0.2 272,582 + PP_0219 0.87 +0.2 272,582 + PP_0219 0.87 -0.7 272,583 - PP_0219 0.87 -3.5 272,632 + -3.4 272,633 - +1.0 272,633 - +0.0 272,676 + -0.4 272,677 - -2.0 273,271 + PP_0220 0.55 -0.2 273,495 + PP_0220 0.75 -1.5 273,551 + PP_0220 0.80 +2.1 273,552 - +3.1 273,552 - PP_0220 0.81 -0.5 273,644 - PP_0220 0.89 -0.2
Or see this region's nucleotide sequence