Experiment: Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0014 and PP_0015 overlap by 4 nucleotides PP_0015 and PP_0016 are separated by 75 nucleotides
PP_0014: PP_0014 - putative transposase, at 17,208 to 19,166
_0014
PP_0015: PP_0015 - putative transposon protein, at 19,163 to 20,122
_0015
PP_0016: PP_0016 - conserved hypothetical protein, at 20,198 to 22,114
_0016
Position (kb) 19
20
21 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 18.244 kb on + strand, within PP_0014 at 18.244 kb on + strand, within PP_0014 at 18.245 kb on - strand, within PP_0014 at 18.321 kb on + strand, within PP_0014 at 18.322 kb on - strand, within PP_0014 at 18.322 kb on - strand, within PP_0014 at 18.392 kb on + strand, within PP_0014 at 18.578 kb on + strand, within PP_0014 at 18.578 kb on + strand, within PP_0014 at 18.579 kb on - strand, within PP_0014 at 18.704 kb on + strand, within PP_0014 at 18.725 kb on + strand, within PP_0014 at 18.751 kb on + strand, within PP_0014 at 18.752 kb on - strand, within PP_0014 at 18.901 kb on - strand, within PP_0014 at 18.902 kb on + strand, within PP_0014 at 18.902 kb on + strand, within PP_0014 at 18.914 kb on + strand, within PP_0014 at 18.915 kb on - strand, within PP_0014 at 18.915 kb on - strand, within PP_0014 at 18.915 kb on - strand, within PP_0014 at 18.926 kb on + strand, within PP_0014 at 18.926 kb on + strand, within PP_0014 at 18.939 kb on + strand, within PP_0014 at 18.940 kb on - strand, within PP_0014 at 18.950 kb on + strand, within PP_0014 at 18.951 kb on - strand, within PP_0014 at 19.066 kb on + strand at 19.066 kb on + strand at 19.066 kb on + strand at 19.067 kb on - strand at 19.097 kb on + strand at 19.097 kb on + strand at 19.097 kb on + strand at 19.097 kb on + strand at 19.098 kb on - strand at 19.098 kb on - strand at 19.098 kb on - strand at 19.098 kb on - strand at 19.103 kb on + strand at 19.104 kb on - strand at 19.157 kb on + strand at 19.157 kb on + strand at 19.158 kb on - strand at 19.158 kb on - strand at 19.158 kb on - strand at 19.181 kb on + strand at 19.205 kb on + strand at 19.205 kb on + strand at 19.206 kb on - strand at 19.206 kb on - strand at 19.206 kb on - strand at 19.213 kb on + strand at 19.213 kb on + strand at 19.213 kb on + strand at 19.213 kb on + strand at 19.213 kb on + strand at 19.214 kb on - strand at 19.231 kb on + strand at 19.232 kb on - strand at 19.269 kb on + strand, within PP_0015 at 19.270 kb on - strand, within PP_0015 at 19.309 kb on + strand, within PP_0015 at 19.309 kb on + strand, within PP_0015 at 19.310 kb on - strand, within PP_0015 at 19.367 kb on + strand, within PP_0015 at 19.367 kb on + strand, within PP_0015 at 19.367 kb on + strand, within PP_0015 at 19.368 kb on - strand, within PP_0015 at 19.368 kb on - strand, within PP_0015 at 19.529 kb on - strand, within PP_0015 at 19.529 kb on - strand, within PP_0015 at 19.542 kb on + strand, within PP_0015 at 19.543 kb on - strand, within PP_0015 at 19.610 kb on + strand, within PP_0015 at 19.618 kb on + strand, within PP_0015 at 19.618 kb on + strand, within PP_0015 at 19.618 kb on + strand, within PP_0015 at 19.619 kb on - strand, within PP_0015 at 19.619 kb on - strand, within PP_0015 at 19.619 kb on - strand, within PP_0015 at 19.628 kb on + strand, within PP_0015 at 19.628 kb on + strand, within PP_0015 at 19.629 kb on - strand, within PP_0015 at 19.629 kb on - strand, within PP_0015 at 19.629 kb on - strand, within PP_0015 at 19.629 kb on - strand, within PP_0015 at 19.629 kb on - strand, within PP_0015 at 19.672 kb on + strand, within PP_0015 at 19.720 kb on - strand, within PP_0015 at 19.789 kb on + strand, within PP_0015 at 19.789 kb on + strand, within PP_0015 at 19.789 kb on + strand, within PP_0015 at 19.790 kb on - strand, within PP_0015 at 19.790 kb on - strand, within PP_0015 at 19.790 kb on - strand, within PP_0015 at 19.790 kb on - strand, within PP_0015 at 19.860 kb on + strand, within PP_0015 at 19.876 kb on + strand, within PP_0015 at 19.877 kb on - strand, within PP_0015 at 19.877 kb on - strand, within PP_0015 at 19.886 kb on + strand, within PP_0015 at 19.886 kb on + strand, within PP_0015 at 19.886 kb on + strand, within PP_0015 at 19.887 kb on - strand, within PP_0015 at 19.898 kb on + strand, within PP_0015 at 19.913 kb on + strand, within PP_0015 at 19.913 kb on + strand, within PP_0015 at 19.914 kb on - strand at 20.021 kb on + strand, within PP_0015 at 20.021 kb on + strand, within PP_0015 at 20.022 kb on - strand, within PP_0015 at 20.022 kb on - strand, within PP_0015 at 20.022 kb on - strand, within PP_0015 at 20.022 kb on - strand, within PP_0015 at 20.116 kb on + strand at 20.116 kb on + strand at 20.117 kb on - strand at 20.117 kb on - strand at 20.117 kb on - strand at 20.117 kb on - strand at 20.154 kb on + strand at 20.170 kb on - strand at 20.170 kb on - strand at 20.170 kb on - strand at 20.193 kb on + strand at 20.194 kb on - strand at 20.194 kb on - strand at 20.211 kb on + strand at 20.211 kb on + strand at 20.211 kb on + strand at 20.211 kb on + strand at 20.211 kb on + strand at 20.211 kb on + strand at 20.212 kb on - strand at 20.212 kb on - strand at 20.212 kb on - strand at 20.252 kb on + strand at 20.425 kb on - strand, within PP_0016 at 20.425 kb on - strand, within PP_0016 at 20.425 kb on - strand, within PP_0016 at 20.425 kb on - strand, within PP_0016 at 20.447 kb on + strand, within PP_0016 at 20.596 kb on + strand, within PP_0016 at 20.597 kb on - strand, within PP_0016 at 20.659 kb on + strand, within PP_0016 at 20.659 kb on + strand, within PP_0016 at 20.700 kb on - strand, within PP_0016 at 20.745 kb on - strand, within PP_0016 at 20.838 kb on + strand, within PP_0016 at 20.844 kb on + strand, within PP_0016 at 20.854 kb on + strand, within PP_0016 at 20.855 kb on - strand, within PP_0016 at 20.855 kb on - strand, within PP_0016 at 20.979 kb on + strand, within PP_0016 at 20.980 kb on - strand, within PP_0016 at 20.981 kb on + strand, within PP_0016 at 20.981 kb on + strand, within PP_0016 at 20.981 kb on + strand, within PP_0016 at 20.981 kb on + strand, within PP_0016 at 20.981 kb on + strand, within PP_0016 at 20.981 kb on + strand, within PP_0016 at 20.982 kb on - strand, within PP_0016 at 20.982 kb on - strand, within PP_0016 at 20.982 kb on - strand, within PP_0016 at 21.075 kb on + strand, within PP_0016
Per-strain Table
Position Strand Gene LocusTag Fraction Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs remove 18,244 + PP_0014 0.53 -0.1 18,244 + PP_0014 0.53 -3.9 18,245 - PP_0014 0.53 +1.6 18,321 + PP_0014 0.57 +1.9 18,322 - PP_0014 0.57 -1.4 18,322 - PP_0014 0.57 -1.8 18,392 + PP_0014 0.60 +1.0 18,578 + PP_0014 0.70 +1.2 18,578 + PP_0014 0.70 +1.2 18,579 - PP_0014 0.70 +0.3 18,704 + PP_0014 0.76 +1.4 18,725 + PP_0014 0.77 +0.2 18,751 + PP_0014 0.79 -3.3 18,752 - PP_0014 0.79 -4.0 18,901 - PP_0014 0.86 +0.2 18,902 + PP_0014 0.86 +0.6 18,902 + PP_0014 0.86 -0.0 18,914 + PP_0014 0.87 -0.1 18,915 - PP_0014 0.87 +1.2 18,915 - PP_0014 0.87 +0.5 18,915 - PP_0014 0.87 -0.5 18,926 + PP_0014 0.88 -0.5 18,926 + PP_0014 0.88 -0.6 18,939 + PP_0014 0.88 -1.3 18,940 - PP_0014 0.88 -0.6 18,950 + PP_0014 0.89 -1.1 18,951 - PP_0014 0.89 +1.4 19,066 + -3.5 19,066 + +0.5 19,066 + +1.6 19,067 - -1.0 19,097 + +0.4 19,097 + -3.9 19,097 + -3.3 19,097 + +0.4 19,098 - -2.9 19,098 - +0.4 19,098 - +0.4 19,098 - +0.7 19,103 + +1.3 19,104 - +0.5 19,157 + +1.4 19,157 + +1.1 19,158 - +0.8 19,158 - -3.1 19,158 - -3.5 19,181 + +0.2 19,205 + -1.0 19,205 + +0.4 19,206 - -0.5 19,206 - +0.1 19,206 - -1.3 19,213 + -1.3 19,213 + -1.6 19,213 + +0.7 19,213 + -0.1 19,213 + -1.8 19,214 - +0.6 19,231 + +0.2 19,232 - +0.0 19,269 + PP_0015 0.11 -3.1 19,270 - PP_0015 0.11 -3.3 19,309 + PP_0015 0.15 -0.3 19,309 + PP_0015 0.15 +0.1 19,310 - PP_0015 0.15 +1.1 19,367 + PP_0015 0.21 +1.4 19,367 + PP_0015 0.21 -2.4 19,367 + PP_0015 0.21 -2.7 19,368 - PP_0015 0.21 -4.7 19,368 - PP_0015 0.21 -0.2 19,529 - PP_0015 0.38 +0.2 19,529 - PP_0015 0.38 +0.2 19,542 + PP_0015 0.39 +0.4 19,543 - PP_0015 0.40 +0.9 19,610 + PP_0015 0.47 -0.6 19,618 + PP_0015 0.47 -1.4 19,618 + PP_0015 0.47 +1.5 19,618 + PP_0015 0.47 -1.6 19,619 - PP_0015 0.47 -1.0 19,619 - PP_0015 0.47 -4.3 19,619 - PP_0015 0.47 -2.6 19,628 + PP_0015 0.48 -0.8 19,628 + PP_0015 0.48 -1.9 19,629 - PP_0015 0.49 -3.5 19,629 - PP_0015 0.49 -1.9 19,629 - PP_0015 0.49 -2.7 19,629 - PP_0015 0.49 +0.1 19,629 - PP_0015 0.49 -3.6 19,672 + PP_0015 0.53 -0.8 19,720 - PP_0015 0.58 +0.2 19,789 + PP_0015 0.65 -1.6 19,789 + PP_0015 0.65 -0.7 19,789 + PP_0015 0.65 +0.4 19,790 - PP_0015 0.65 -3.2 19,790 - PP_0015 0.65 -0.4 19,790 - PP_0015 0.65 -3.7 19,790 - PP_0015 0.65 +0.7 19,860 + PP_0015 0.73 +0.8 19,876 + PP_0015 0.74 -3.1 19,877 - PP_0015 0.74 -3.5 19,877 - PP_0015 0.74 -0.1 19,886 + PP_0015 0.75 -3.2 19,886 + PP_0015 0.75 -3.8 19,886 + PP_0015 0.75 -0.3 19,887 - PP_0015 0.75 +1.0 19,898 + PP_0015 0.77 +0.9 19,913 + PP_0015 0.78 -1.8 19,913 + PP_0015 0.78 +1.1 19,914 - -1.1 20,021 + PP_0015 0.89 -4.1 20,021 + PP_0015 0.89 -0.4 20,022 - PP_0015 0.89 +0.7 20,022 - PP_0015 0.89 +1.0 20,022 - PP_0015 0.89 +0.5 20,022 - PP_0015 0.89 +1.0 20,116 + +2.0 20,116 + +0.3 20,117 - +0.5 20,117 - +1.5 20,117 - +0.7 20,117 - +1.2 20,154 + -0.7 20,170 - +0.8 20,170 - +0.4 20,170 - -0.2 20,193 + +0.1 20,194 - -0.3 20,194 - -0.3 20,211 + -1.3 20,211 + +0.1 20,211 + +0.0 20,211 + -0.3 20,211 + -2.4 20,211 + -3.3 20,212 - -0.6 20,212 - -2.5 20,212 - -2.3 20,252 + +1.4 20,425 - PP_0016 0.12 -4.6 20,425 - PP_0016 0.12 +0.0 20,425 - PP_0016 0.12 -2.2 20,425 - PP_0016 0.12 +0.9 20,447 + PP_0016 0.13 -0.0 20,596 + PP_0016 0.21 -3.2 20,597 - PP_0016 0.21 -2.0 20,659 + PP_0016 0.24 -0.3 20,659 + PP_0016 0.24 +1.4 20,700 - PP_0016 0.26 -0.2 20,745 - PP_0016 0.29 +0.6 20,838 + PP_0016 0.33 -0.7 20,844 + PP_0016 0.34 -2.8 20,854 + PP_0016 0.34 -1.1 20,855 - PP_0016 0.34 +1.8 20,855 - PP_0016 0.34 +0.1 20,979 + PP_0016 0.41 +0.6 20,980 - PP_0016 0.41 -1.1 20,981 + PP_0016 0.41 +1.4 20,981 + PP_0016 0.41 -0.4 20,981 + PP_0016 0.41 -0.9 20,981 + PP_0016 0.41 +1.9 20,981 + PP_0016 0.41 -0.5 20,981 + PP_0016 0.41 +1.5 20,982 - PP_0016 0.41 -2.3 20,982 - PP_0016 0.41 -3.9 20,982 - PP_0016 0.41 -0.2 21,075 + PP_0016 0.46 +0.4
Or see this region's nucleotide sequence