Strain Fitness in Pseudomonas putida KT2440 around PP_0521

Experiment: Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0519 and PP_0520 overlap by 4 nucleotidesPP_0520 and PP_0521 are separated by 16 nucleotidesPP_0521 and PP_0522 are separated by 180 nucleotidesPP_0522 and PP_0523 overlap by 4 nucleotides PP_0519: PP_0519 - thiamin monophosphate kinase, at 604,688 to 605,656 _0519 PP_0520: PP_0520 - phosphatidylglycerophosphatase A, at 605,653 to 606,156 _0520 PP_0521: PP_0521 - conserved exported protein of unknown function, at 606,173 to 606,916 _0521 PP_0522: PP_0522 - GTP cyclohydrolase-2, at 607,097 to 607,714 _0522 PP_0523: PP_0523 - conserved membrane protein of unknown function, at 607,711 to 608,130 _0523 Position (kb) 606 607Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 605.641 kb on + strandat 605.834 kb on - strand, within PP_0520at 605.906 kb on + strand, within PP_0520at 605.906 kb on + strand, within PP_0520at 606.180 kb on + strandat 606.181 kb on - strandat 606.189 kb on + strandat 606.189 kb on + strandat 606.189 kb on + strandat 606.189 kb on + strandat 606.190 kb on - strandat 606.190 kb on - strandat 606.211 kb on + strandat 606.211 kb on + strandat 606.212 kb on - strandat 606.212 kb on - strandat 606.284 kb on + strand, within PP_0521at 606.284 kb on + strand, within PP_0521at 606.284 kb on + strand, within PP_0521at 606.285 kb on - strand, within PP_0521at 606.434 kb on + strand, within PP_0521at 606.435 kb on - strand, within PP_0521at 606.462 kb on - strand, within PP_0521at 606.490 kb on + strand, within PP_0521at 606.490 kb on + strand, within PP_0521at 606.490 kb on + strand, within PP_0521at 606.490 kb on + strand, within PP_0521at 606.490 kb on + strand, within PP_0521at 606.490 kb on + strand, within PP_0521at 606.491 kb on - strand, within PP_0521at 606.491 kb on - strand, within PP_0521at 606.491 kb on - strand, within PP_0521at 606.491 kb on - strand, within PP_0521at 606.491 kb on - strand, within PP_0521at 606.491 kb on - strand, within PP_0521at 606.491 kb on - strand, within PP_0521at 606.491 kb on - strand, within PP_0521at 606.491 kb on - strand, within PP_0521at 606.491 kb on - strand, within PP_0521at 606.491 kb on - strand, within PP_0521at 606.491 kb on - strand, within PP_0521at 606.491 kb on - strand, within PP_0521at 606.491 kb on - strand, within PP_0521at 606.491 kb on - strand, within PP_0521at 606.491 kb on - strand, within PP_0521at 606.491 kb on - strand, within PP_0521at 606.494 kb on + strand, within PP_0521at 606.494 kb on + strand, within PP_0521at 606.494 kb on + strand, within PP_0521at 606.494 kb on + strand, within PP_0521at 606.494 kb on + strand, within PP_0521at 606.494 kb on + strand, within PP_0521at 606.494 kb on + strand, within PP_0521at 606.495 kb on - strand, within PP_0521at 606.495 kb on - strand, within PP_0521at 606.495 kb on - strand, within PP_0521at 606.495 kb on - strand, within PP_0521at 606.495 kb on - strand, within PP_0521at 606.495 kb on - strand, within PP_0521at 606.526 kb on + strand, within PP_0521at 606.548 kb on + strand, within PP_0521at 606.572 kb on + strand, within PP_0521at 606.587 kb on + strand, within PP_0521at 606.587 kb on + strand, within PP_0521at 606.588 kb on - strand, within PP_0521at 606.588 kb on - strand, within PP_0521at 606.588 kb on - strand, within PP_0521at 606.588 kb on - strand, within PP_0521at 606.588 kb on - strand, within PP_0521at 606.668 kb on + strand, within PP_0521at 606.668 kb on + strand, within PP_0521at 606.668 kb on + strand, within PP_0521at 606.668 kb on + strand, within PP_0521at 606.669 kb on - strand, within PP_0521at 606.671 kb on + strand, within PP_0521at 606.671 kb on + strand, within PP_0521at 606.671 kb on + strand, within PP_0521at 606.671 kb on + strand, within PP_0521at 606.672 kb on - strand, within PP_0521at 606.672 kb on - strand, within PP_0521at 606.698 kb on + strand, within PP_0521at 606.698 kb on + strand, within PP_0521at 606.698 kb on + strand, within PP_0521at 606.699 kb on - strand, within PP_0521at 606.699 kb on - strand, within PP_0521at 606.764 kb on + strand, within PP_0521at 606.764 kb on + strand, within PP_0521at 606.765 kb on - strand, within PP_0521at 606.765 kb on - strand, within PP_0521at 606.765 kb on - strand, within PP_0521at 606.782 kb on - strand, within PP_0521at 606.837 kb on + strand, within PP_0521at 606.837 kb on + strand, within PP_0521at 606.837 kb on + strand, within PP_0521at 606.837 kb on + strand, within PP_0521at 606.838 kb on - strand, within PP_0521at 606.841 kb on + strand, within PP_0521at 606.884 kb on + strandat 606.924 kb on + strandat 606.925 kb on - strandat 606.934 kb on + strandat 606.934 kb on + strandat 606.934 kb on + strandat 606.934 kb on + strandat 606.934 kb on + strandat 606.934 kb on + strandat 606.934 kb on + strandat 606.935 kb on - strandat 606.935 kb on - strandat 606.935 kb on - strandat 606.936 kb on + strandat 606.937 kb on - strandat 606.983 kb on + strandat 606.986 kb on + strandat 606.986 kb on + strandat 606.987 kb on - strandat 607.008 kb on + strandat 607.018 kb on + strandat 607.018 kb on + strandat 607.020 kb on + strandat 607.020 kb on + strandat 607.020 kb on + strandat 607.020 kb on + strandat 607.020 kb on + strandat 607.020 kb on + strandat 607.020 kb on + strandat 607.021 kb on - strandat 607.051 kb on + strandat 607.080 kb on + strandat 607.080 kb on + strandat 607.900 kb on + strandat 607.900 kb on + strand, within PP_0523at 607.901 kb on - strand, within PP_0523at 607.914 kb on + strand, within PP_0523at 607.915 kb on - strand, within PP_0523at 607.915 kb on - strand, within PP_0523at 607.915 kb on - strand, within PP_0523at 607.915 kb on - strand, within PP_0523at 607.915 kb on - strand, within PP_0523at 607.915 kb on - strand, within PP_0523

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Per-strain Table

Position Strand Gene LocusTag Fraction Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs
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605,641 + -0.4
605,834 - PP_0520 0.36 -3.0
605,906 + PP_0520 0.50 +0.1
605,906 + PP_0520 0.50 -1.1
606,180 + -3.5
606,181 - -3.2
606,189 + -1.2
606,189 + +1.9
606,189 + -0.9
606,189 + -0.8
606,190 - -3.7
606,190 - +0.6
606,211 + -3.8
606,211 + +0.5
606,212 - +0.6
606,212 - -0.9
606,284 + PP_0521 0.15 -2.1
606,284 + PP_0521 0.15 -0.4
606,284 + PP_0521 0.15 -0.5
606,285 - PP_0521 0.15 -2.0
606,434 + PP_0521 0.35 -4.4
606,435 - PP_0521 0.35 -3.1
606,462 - PP_0521 0.39 -0.2
606,490 + PP_0521 0.43 -0.3
606,490 + PP_0521 0.43 -3.2
606,490 + PP_0521 0.43 +0.4
606,490 + PP_0521 0.43 +1.0
606,490 + PP_0521 0.43 -2.2
606,490 + PP_0521 0.43 +2.3
606,491 - PP_0521 0.43 -1.2
606,491 - PP_0521 0.43 -4.4
606,491 - PP_0521 0.43 -3.0
606,491 - PP_0521 0.43 -1.7
606,491 - PP_0521 0.43 +1.1
606,491 - PP_0521 0.43 -1.8
606,491 - PP_0521 0.43 -3.3
606,491 - PP_0521 0.43 -0.7
606,491 - PP_0521 0.43 -3.9
606,491 - PP_0521 0.43 +0.3
606,491 - PP_0521 0.43 +0.4
606,491 - PP_0521 0.43 -0.1
606,491 - PP_0521 0.43 -0.1
606,491 - PP_0521 0.43 -3.6
606,491 - PP_0521 0.43 -0.2
606,491 - PP_0521 0.43 +0.6
606,491 - PP_0521 0.43 -4.5
606,494 + PP_0521 0.43 +0.4
606,494 + PP_0521 0.43 -0.5
606,494 + PP_0521 0.43 -4.7
606,494 + PP_0521 0.43 -1.7
606,494 + PP_0521 0.43 -1.7
606,494 + PP_0521 0.43 -2.4
606,494 + PP_0521 0.43 -0.9
606,495 - PP_0521 0.43 -3.2
606,495 - PP_0521 0.43 +1.0
606,495 - PP_0521 0.43 -3.1
606,495 - PP_0521 0.43 +0.2
606,495 - PP_0521 0.43 -0.8
606,495 - PP_0521 0.43 +0.1
606,526 + PP_0521 0.47 -0.2
606,548 + PP_0521 0.50 +0.2
606,572 + PP_0521 0.54 +0.4
606,587 + PP_0521 0.56 -2.6
606,587 + PP_0521 0.56 -4.1
606,588 - PP_0521 0.56 -1.5
606,588 - PP_0521 0.56 +1.8
606,588 - PP_0521 0.56 +0.5
606,588 - PP_0521 0.56 -3.8
606,588 - PP_0521 0.56 +0.1
606,668 + PP_0521 0.67 -0.0
606,668 + PP_0521 0.67 +0.5
606,668 + PP_0521 0.67 -0.5
606,668 + PP_0521 0.67 +0.4
606,669 - PP_0521 0.67 +0.3
606,671 + PP_0521 0.67 +0.7
606,671 + PP_0521 0.67 -1.7
606,671 + PP_0521 0.67 -0.9
606,671 + PP_0521 0.67 -1.0
606,672 - PP_0521 0.67 -0.3
606,672 - PP_0521 0.67 -1.6
606,698 + PP_0521 0.71 -3.7
606,698 + PP_0521 0.71 +0.2
606,698 + PP_0521 0.71 -1.3
606,699 - PP_0521 0.71 -0.5
606,699 - PP_0521 0.71 -1.4
606,764 + PP_0521 0.79 -3.8
606,764 + PP_0521 0.79 -0.4
606,765 - PP_0521 0.80 +2.3
606,765 - PP_0521 0.80 -1.8
606,765 - PP_0521 0.80 -1.1
606,782 - PP_0521 0.82 -0.2
606,837 + PP_0521 0.89 -4.3
606,837 + PP_0521 0.89 +0.1
606,837 + PP_0521 0.89 +0.6
606,837 + PP_0521 0.89 -0.4
606,838 - PP_0521 0.89 -1.2
606,841 + PP_0521 0.90 +1.0
606,884 + +0.5
606,924 + +0.4
606,925 - -2.6
606,934 + +0.3
606,934 + +0.6
606,934 + +0.1
606,934 + +0.1
606,934 + -0.5
606,934 + -0.9
606,934 + -0.9
606,935 - -1.4
606,935 - -2.3
606,935 - +1.7
606,936 + -0.2
606,937 - +1.1
606,983 + +0.9
606,986 + -1.5
606,986 + +0.8
606,987 - -1.5
607,008 + -4.4
607,018 + +0.6
607,018 + -3.3
607,020 + -3.6
607,020 + +0.0
607,020 + +0.0
607,020 + +0.2
607,020 + -2.8
607,020 + +1.6
607,020 + +1.5
607,021 - -0.7
607,051 + +0.8
607,080 + +1.2
607,080 + -0.1
607,900 + +1.8
607,900 + PP_0523 0.45 -1.0
607,901 - PP_0523 0.45 -0.5
607,914 + PP_0523 0.48 +0.6
607,915 - PP_0523 0.49 -0.4
607,915 - PP_0523 0.49 -0.2
607,915 - PP_0523 0.49 +0.0
607,915 - PP_0523 0.49 +0.3
607,915 - PP_0523 0.49 +0.1
607,915 - PP_0523 0.49 -4.4

Or see this region's nucleotide sequence