Experiment: Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0500 and PP_0501 overlap by 8 nucleotides PP_0501 and PP_0502 are separated by 30 nucleotides PP_0502 and PP_0503 are separated by 102 nucleotides
PP_0500: PP_0500 - dTDP-4-rhamnose reductase-related protein, at 589,877 to 590,761
_0500
PP_0501: PP_0501 - NAD-dependent epimerase/dehydratase family protein, at 590,754 to 591,686
_0501
PP_0502: PP_0502 - conserved protein of unknown function, at 591,717 to 592,160
_0502
PP_0503: PP_0503 - Major facilitator family transporter, at 592,263 to 593,468
_0503
Position (kb) 591
592
593 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 591.759 kb on + strand at 591.759 kb on + strand at 591.759 kb on + strand at 591.759 kb on + strand at 591.759 kb on + strand at 591.760 kb on - strand at 591.760 kb on - strand at 591.760 kb on - strand at 591.760 kb on - strand at 591.793 kb on - strand, within PP_0502 at 591.928 kb on + strand, within PP_0502 at 591.929 kb on - strand, within PP_0502 at 591.936 kb on - strand, within PP_0502 at 591.937 kb on + strand, within PP_0502 at 591.937 kb on + strand, within PP_0502 at 591.938 kb on - strand, within PP_0502 at 591.997 kb on - strand, within PP_0502 at 592.111 kb on - strand, within PP_0502 at 592.111 kb on - strand, within PP_0502 at 592.211 kb on - strand at 592.214 kb on + strand at 592.215 kb on - strand at 592.289 kb on - strand at 592.335 kb on + strand at 592.335 kb on + strand at 592.336 kb on - strand at 592.336 kb on - strand at 592.429 kb on - strand, within PP_0503 at 592.555 kb on + strand, within PP_0503 at 592.555 kb on + strand, within PP_0503 at 592.556 kb on - strand, within PP_0503 at 592.556 kb on - strand, within PP_0503 at 592.556 kb on - strand, within PP_0503 at 592.752 kb on + strand, within PP_0503 at 593.090 kb on + strand, within PP_0503 at 593.091 kb on - strand, within PP_0503 at 593.091 kb on - strand, within PP_0503
Per-strain Table
Position Strand Gene LocusTag Fraction Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs remove 591,759 + -1.5 591,759 + -2.7 591,759 + +1.6 591,759 + +1.4 591,759 + -0.6 591,760 - -0.5 591,760 - -4.4 591,760 - -3.1 591,760 - -0.4 591,793 - PP_0502 0.17 -4.0 591,928 + PP_0502 0.48 -1.4 591,929 - PP_0502 0.48 -0.3 591,936 - PP_0502 0.49 +0.3 591,937 + PP_0502 0.50 -2.6 591,937 + PP_0502 0.50 -2.4 591,938 - PP_0502 0.50 -2.2 591,997 - PP_0502 0.63 -0.2 592,111 - PP_0502 0.89 -0.8 592,111 - PP_0502 0.89 -2.6 592,211 - +0.4 592,214 + -0.9 592,215 - +1.4 592,289 - -3.2 592,335 + +1.8 592,335 + -1.6 592,336 - -0.5 592,336 - -0.6 592,429 - PP_0503 0.14 -0.8 592,555 + PP_0503 0.24 -4.1 592,555 + PP_0503 0.24 +0.2 592,556 - PP_0503 0.24 +0.1 592,556 - PP_0503 0.24 -2.7 592,556 - PP_0503 0.24 +1.5 592,752 + PP_0503 0.41 -3.4 593,090 + PP_0503 0.69 -0.2 593,091 - PP_0503 0.69 +2.4 593,091 - PP_0503 0.69 +0.6
Or see this region's nucleotide sequence