Strain Fitness in Pseudomonas putida KT2440 around PP_0216

Experiment: Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0215 and PP_0216 are separated by 90 nucleotidesPP_0216 and PP_0217 are separated by 99 nucleotides PP_0215: PP_0215 - Response regulator, at 266,291 to 267,550 _0215 PP_0216: PP_0216 - putative sensory box/GGDEF family protein, at 267,641 to 268,669 _0216 PP_0217: PP_0217 - delta-9 fatty acid desaturase, at 268,769 to 269,953 _0217 Position (kb) 267 268 269Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 266.732 kb on + strand, within PP_0215at 266.733 kb on - strand, within PP_0215at 266.896 kb on + strand, within PP_0215at 266.896 kb on + strand, within PP_0215at 267.080 kb on + strand, within PP_0215at 267.080 kb on + strand, within PP_0215at 267.128 kb on + strand, within PP_0215at 267.128 kb on + strand, within PP_0215at 267.128 kb on + strand, within PP_0215at 267.129 kb on - strand, within PP_0215at 267.323 kb on + strand, within PP_0215at 267.323 kb on + strand, within PP_0215at 267.323 kb on + strand, within PP_0215at 267.323 kb on + strand, within PP_0215at 267.324 kb on - strand, within PP_0215at 267.344 kb on + strand, within PP_0215at 267.345 kb on - strand, within PP_0215at 267.501 kb on + strandat 267.502 kb on - strandat 267.609 kb on + strandat 267.610 kb on - strandat 267.654 kb on - strandat 267.684 kb on + strandat 267.684 kb on + strandat 267.684 kb on + strandat 267.684 kb on + strandat 267.685 kb on - strandat 267.709 kb on - strandat 267.809 kb on + strand, within PP_0216at 267.809 kb on + strand, within PP_0216at 267.810 kb on - strand, within PP_0216at 267.810 kb on - strand, within PP_0216at 267.810 kb on - strand, within PP_0216at 267.856 kb on + strand, within PP_0216at 267.981 kb on + strand, within PP_0216at 267.981 kb on + strand, within PP_0216at 267.981 kb on + strand, within PP_0216at 267.981 kb on + strand, within PP_0216at 267.981 kb on + strand, within PP_0216at 267.981 kb on + strand, within PP_0216at 267.981 kb on + strand, within PP_0216at 267.981 kb on + strand, within PP_0216at 267.981 kb on + strand, within PP_0216at 267.981 kb on + strand, within PP_0216at 267.982 kb on - strand, within PP_0216at 267.982 kb on - strand, within PP_0216at 267.982 kb on - strand, within PP_0216at 267.982 kb on - strand, within PP_0216at 267.982 kb on - strand, within PP_0216at 267.982 kb on - strand, within PP_0216at 268.039 kb on + strand, within PP_0216at 268.039 kb on + strand, within PP_0216at 268.039 kb on + strand, within PP_0216at 268.039 kb on + strand, within PP_0216at 268.039 kb on + strand, within PP_0216at 268.040 kb on - strand, within PP_0216at 268.227 kb on + strand, within PP_0216at 268.227 kb on + strand, within PP_0216at 268.228 kb on - strand, within PP_0216at 268.228 kb on - strand, within PP_0216at 268.228 kb on - strand, within PP_0216at 268.228 kb on - strand, within PP_0216at 268.310 kb on + strand, within PP_0216at 268.310 kb on + strand, within PP_0216at 268.311 kb on - strand, within PP_0216at 268.354 kb on - strand, within PP_0216at 268.378 kb on - strand, within PP_0216at 268.422 kb on + strand, within PP_0216at 268.423 kb on - strand, within PP_0216at 268.437 kb on + strand, within PP_0216at 268.437 kb on + strand, within PP_0216at 268.437 kb on + strand, within PP_0216at 268.437 kb on + strand, within PP_0216at 268.437 kb on + strand, within PP_0216at 268.438 kb on - strand, within PP_0216at 268.565 kb on + strand, within PP_0216at 268.565 kb on + strand, within PP_0216at 268.691 kb on - strandat 268.691 kb on - strandat 268.794 kb on + strandat 268.856 kb on + strandat 268.857 kb on - strandat 268.857 kb on - strandat 268.857 kb on - strandat 268.942 kb on - strand, within PP_0217at 269.319 kb on + strand, within PP_0217at 269.375 kb on + strand, within PP_0217at 269.376 kb on - strand, within PP_0217at 269.486 kb on + strand, within PP_0217at 269.486 kb on + strand, within PP_0217at 269.486 kb on + strand, within PP_0217at 269.498 kb on + strand, within PP_0217at 269.498 kb on + strand, within PP_0217at 269.498 kb on + strand, within PP_0217at 269.498 kb on + strand, within PP_0217at 269.498 kb on + strand, within PP_0217at 269.499 kb on - strand, within PP_0217at 269.499 kb on - strand, within PP_0217at 269.499 kb on - strand, within PP_0217at 269.608 kb on - strand, within PP_0217at 269.608 kb on - strand, within PP_0217at 269.608 kb on - strand, within PP_0217at 269.608 kb on - strand, within PP_0217at 269.647 kb on - strand, within PP_0217

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Per-strain Table

Position Strand Gene LocusTag Fraction Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs
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266,732 + PP_0215 0.35 -0.3
266,733 - PP_0215 0.35 -0.3
266,896 + PP_0215 0.48 -1.9
266,896 + PP_0215 0.48 -2.2
267,080 + PP_0215 0.63 -0.5
267,080 + PP_0215 0.63 -0.7
267,128 + PP_0215 0.66 +1.4
267,128 + PP_0215 0.66 -2.2
267,128 + PP_0215 0.66 +1.5
267,129 - PP_0215 0.67 +1.3
267,323 + PP_0215 0.82 +0.7
267,323 + PP_0215 0.82 -2.8
267,323 + PP_0215 0.82 +0.5
267,323 + PP_0215 0.82 -1.5
267,324 - PP_0215 0.82 -1.1
267,344 + PP_0215 0.84 -4.0
267,345 - PP_0215 0.84 +1.0
267,501 + -3.4
267,502 - -2.7
267,609 + +1.0
267,610 - -0.7
267,654 - -4.0
267,684 + -0.0
267,684 + -3.1
267,684 + +0.7
267,684 + +1.6
267,685 - +0.2
267,709 - -0.3
267,809 + PP_0216 0.16 +0.4
267,809 + PP_0216 0.16 +2.0
267,810 - PP_0216 0.16 +0.2
267,810 - PP_0216 0.16 -3.9
267,810 - PP_0216 0.16 +0.4
267,856 + PP_0216 0.21 -0.8
267,981 + PP_0216 0.33 -1.5
267,981 + PP_0216 0.33 -0.3
267,981 + PP_0216 0.33 -1.6
267,981 + PP_0216 0.33 -2.2
267,981 + PP_0216 0.33 +0.7
267,981 + PP_0216 0.33 +0.4
267,981 + PP_0216 0.33 -0.8
267,981 + PP_0216 0.33 -0.2
267,981 + PP_0216 0.33 -1.6
267,981 + PP_0216 0.33 -0.3
267,982 - PP_0216 0.33 +0.8
267,982 - PP_0216 0.33 +0.6
267,982 - PP_0216 0.33 -3.7
267,982 - PP_0216 0.33 +0.1
267,982 - PP_0216 0.33 -0.3
267,982 - PP_0216 0.33 +0.2
268,039 + PP_0216 0.39 -3.1
268,039 + PP_0216 0.39 -3.3
268,039 + PP_0216 0.39 -0.8
268,039 + PP_0216 0.39 -0.1
268,039 + PP_0216 0.39 -0.0
268,040 - PP_0216 0.39 +0.2
268,227 + PP_0216 0.57 -2.5
268,227 + PP_0216 0.57 -0.3
268,228 - PP_0216 0.57 -1.9
268,228 - PP_0216 0.57 +0.3
268,228 - PP_0216 0.57 -0.2
268,228 - PP_0216 0.57 +0.8
268,310 + PP_0216 0.65 +0.3
268,310 + PP_0216 0.65 +0.1
268,311 - PP_0216 0.65 +0.9
268,354 - PP_0216 0.69 +1.7
268,378 - PP_0216 0.72 -0.7
268,422 + PP_0216 0.76 -0.8
268,423 - PP_0216 0.76 -0.8
268,437 + PP_0216 0.77 -4.3
268,437 + PP_0216 0.77 -0.2
268,437 + PP_0216 0.77 -0.9
268,437 + PP_0216 0.77 +1.5
268,437 + PP_0216 0.77 -1.2
268,438 - PP_0216 0.77 -1.4
268,565 + PP_0216 0.90 -0.9
268,565 + PP_0216 0.90 -0.1
268,691 - +1.6
268,691 - +1.0
268,794 + -0.7
268,856 + -0.9
268,857 - +1.1
268,857 - -3.9
268,857 - +1.1
268,942 - PP_0217 0.15 -1.3
269,319 + PP_0217 0.46 -0.2
269,375 + PP_0217 0.51 +0.3
269,376 - PP_0217 0.51 -3.6
269,486 + PP_0217 0.61 +1.4
269,486 + PP_0217 0.61 -2.2
269,486 + PP_0217 0.61 +0.7
269,498 + PP_0217 0.62 +0.3
269,498 + PP_0217 0.62 +1.4
269,498 + PP_0217 0.62 +1.6
269,498 + PP_0217 0.62 -0.9
269,498 + PP_0217 0.62 +1.9
269,499 - PP_0217 0.62 -3.9
269,499 - PP_0217 0.62 +1.1
269,499 - PP_0217 0.62 -4.1
269,608 - PP_0217 0.71 -3.7
269,608 - PP_0217 0.71 -3.1
269,608 - PP_0217 0.71 -1.9
269,608 - PP_0217 0.71 -0.9
269,647 - PP_0217 0.74 +1.7

Or see this region's nucleotide sequence