Experiment: Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_5239 and PP_5240 are separated by 68 nucleotides PP_5240 and PP_5241 overlap by 4 nucleotides
PP_5239: PP_5239 - putative ATP-dependent chelatase, at 5,976,200 to 5,977,690
_5239
PP_5240: PP_5240 - Response regulator, at 5,977,759 to 5,978,127
_5240
PP_5241: PP_5241 - DNA-binding response regulator, LuxR family, at 5,978,124 to 5,979,116
_5241
Position (kb) 5977
5978
5979 Strain fitness (log2 ratio) -2
-1
0
1 at 5977.375 kb on + strand, within PP_5239 at 5977.375 kb on + strand, within PP_5239 at 5977.375 kb on + strand, within PP_5239 at 5977.376 kb on - strand, within PP_5239 at 5977.376 kb on - strand, within PP_5239 at 5977.376 kb on - strand, within PP_5239 at 5977.376 kb on - strand, within PP_5239 at 5977.376 kb on - strand, within PP_5239 at 5977.376 kb on - strand, within PP_5239 at 5977.498 kb on - strand, within PP_5239 at 5977.498 kb on - strand, within PP_5239 at 5977.688 kb on + strand at 5977.689 kb on - strand at 5977.689 kb on - strand at 5977.689 kb on - strand at 5977.755 kb on + strand at 5977.755 kb on + strand at 5977.755 kb on + strand at 5977.755 kb on + strand at 5977.755 kb on + strand at 5977.755 kb on + strand at 5977.756 kb on - strand at 5977.756 kb on - strand at 5977.756 kb on - strand at 5977.890 kb on + strand, within PP_5240 at 5977.890 kb on + strand, within PP_5240 at 5977.891 kb on - strand, within PP_5240 at 5977.891 kb on - strand, within PP_5240 at 5977.891 kb on - strand, within PP_5240 at 5977.936 kb on + strand, within PP_5240 at 5978.339 kb on - strand, within PP_5241 at 5978.559 kb on + strand, within PP_5241 at 5978.559 kb on + strand, within PP_5241
Per-strain Table
Position Strand Gene LocusTag Fraction Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs remove 5,977,375 + PP_5239 0.79 -0.9 5,977,375 + PP_5239 0.79 -0.4 5,977,375 + PP_5239 0.79 -1.2 5,977,376 - PP_5239 0.79 +0.9 5,977,376 - PP_5239 0.79 +0.9 5,977,376 - PP_5239 0.79 -2.7 5,977,376 - PP_5239 0.79 +1.5 5,977,376 - PP_5239 0.79 -2.5 5,977,376 - PP_5239 0.79 -1.4 5,977,498 - PP_5239 0.87 -0.6 5,977,498 - PP_5239 0.87 -0.2 5,977,688 + +0.3 5,977,689 - -1.3 5,977,689 - -1.6 5,977,689 - -2.5 5,977,755 + +0.3 5,977,755 + -0.1 5,977,755 + -0.3 5,977,755 + -0.0 5,977,755 + -0.9 5,977,755 + -1.8 5,977,756 - +0.1 5,977,756 - -2.0 5,977,756 - -1.1 5,977,890 + PP_5240 0.36 -1.0 5,977,890 + PP_5240 0.36 -0.5 5,977,891 - PP_5240 0.36 -1.2 5,977,891 - PP_5240 0.36 +1.7 5,977,891 - PP_5240 0.36 +1.4 5,977,936 + PP_5240 0.48 -0.5 5,978,339 - PP_5241 0.22 +1.6 5,978,559 + PP_5241 0.44 -0.1 5,978,559 + PP_5241 0.44 +1.4
Or see this region's nucleotide sequence