Experiment: Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_3901 and PP_3902 are separated by 118 nucleotides PP_3902 and PP_3903 overlap by 11 nucleotides PP_3903 and PP_3904 are separated by 205 nucleotides PP_3904 and PP_3905 are separated by 8 nucleotides PP_3905 and PP_3906 are separated by 19 nucleotides PP_3906 and PP_3907 overlap by 4 nucleotides
PP_3901: PP_3901 - conserved protein of unknown function, at 4,415,798 to 4,416,058
_3901
PP_3902: PP_3902 - conserved protein of unknown function, at 4,416,177 to 4,416,485
_3902
PP_3903: PP_3903 - conserved protein of unknown function, at 4,416,475 to 4,416,639
_3903
PP_3904: PP_3904 - conserved protein of unknown function, at 4,416,845 to 4,417,099
_3904
PP_3905: PP_3905 - Transcriptional regulator, LuxR family, at 4,417,108 to 4,417,659
_3905
PP_3906: PP_3906 - conserved protein of unknown function, at 4,417,679 to 4,417,948
_3906
PP_3907: PP_3907 - conserved protein of unknown function, at 4,417,945 to 4,418,403
_3907
Position (kb) 4416
4417
4418 Strain fitness (log2 ratio) -2
-1
0
1 at 4415.924 kb on + strand, within PP_3901 at 4415.924 kb on + strand, within PP_3901 at 4415.924 kb on + strand, within PP_3901 at 4415.925 kb on - strand, within PP_3901 at 4415.925 kb on - strand, within PP_3901 at 4415.994 kb on + strand, within PP_3901 at 4415.995 kb on - strand, within PP_3901 at 4415.995 kb on - strand, within PP_3901 at 4415.995 kb on - strand, within PP_3901 at 4415.995 kb on - strand, within PP_3901 at 4416.049 kb on - strand at 4416.107 kb on + strand at 4416.126 kb on + strand at 4416.433 kb on + strand, within PP_3902 at 4416.433 kb on + strand, within PP_3902 at 4416.433 kb on + strand, within PP_3902 at 4416.434 kb on - strand, within PP_3902 at 4416.434 kb on - strand, within PP_3902 at 4416.518 kb on + strand, within PP_3903 at 4416.518 kb on + strand, within PP_3903 at 4416.519 kb on - strand, within PP_3903 at 4416.551 kb on + strand, within PP_3903 at 4416.637 kb on + strand at 4416.650 kb on + strand at 4416.706 kb on - strand at 4416.717 kb on + strand at 4416.718 kb on - strand at 4416.745 kb on + strand at 4416.776 kb on + strand at 4416.777 kb on - strand at 4416.777 kb on - strand at 4416.777 kb on - strand at 4416.847 kb on - strand at 4416.878 kb on - strand, within PP_3904 at 4416.891 kb on - strand, within PP_3904 at 4417.001 kb on - strand, within PP_3904 at 4417.078 kb on + strand at 4417.094 kb on + strand at 4417.095 kb on - strand at 4417.113 kb on + strand at 4417.134 kb on + strand at 4417.134 kb on + strand at 4417.134 kb on + strand at 4417.134 kb on + strand at 4417.135 kb on - strand at 4417.358 kb on + strand, within PP_3905 at 4417.648 kb on + strand at 4417.649 kb on - strand at 4417.877 kb on + strand, within PP_3906 at 4417.878 kb on - strand, within PP_3906 at 4417.878 kb on - strand, within PP_3906 at 4417.878 kb on - strand, within PP_3906 at 4418.093 kb on + strand, within PP_3907 at 4418.093 kb on + strand, within PP_3907 at 4418.093 kb on + strand, within PP_3907 at 4418.094 kb on - strand, within PP_3907 at 4418.094 kb on - strand, within PP_3907
Per-strain Table
Position Strand Gene LocusTag Fraction Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs remove 4,415,924 + PP_3901 0.48 +1.3 4,415,924 + PP_3901 0.48 -0.8 4,415,924 + PP_3901 0.48 +0.9 4,415,925 - PP_3901 0.49 +1.1 4,415,925 - PP_3901 0.49 +0.9 4,415,994 + PP_3901 0.75 +1.2 4,415,995 - PP_3901 0.75 -1.3 4,415,995 - PP_3901 0.75 +1.3 4,415,995 - PP_3901 0.75 -0.8 4,415,995 - PP_3901 0.75 +0.1 4,416,049 - -0.8 4,416,107 + -0.2 4,416,126 + +1.0 4,416,433 + PP_3902 0.83 +0.1 4,416,433 + PP_3902 0.83 -0.6 4,416,433 + PP_3902 0.83 -0.5 4,416,434 - PP_3902 0.83 -0.5 4,416,434 - PP_3902 0.83 -0.7 4,416,518 + PP_3903 0.26 -0.0 4,416,518 + PP_3903 0.26 +0.4 4,416,519 - PP_3903 0.27 -1.0 4,416,551 + PP_3903 0.46 +1.1 4,416,637 + +1.0 4,416,650 + -0.4 4,416,706 - +1.5 4,416,717 + -1.3 4,416,718 - -1.3 4,416,745 + -0.8 4,416,776 + -0.4 4,416,777 - +0.5 4,416,777 - +0.8 4,416,777 - -1.2 4,416,847 - +1.0 4,416,878 - PP_3904 0.13 +0.5 4,416,891 - PP_3904 0.18 +0.3 4,417,001 - PP_3904 0.61 +0.4 4,417,078 + +0.7 4,417,094 + +0.4 4,417,095 - -2.0 4,417,113 + -0.3 4,417,134 + +1.7 4,417,134 + +1.2 4,417,134 + +0.7 4,417,134 + +0.6 4,417,135 - -1.3 4,417,358 + PP_3905 0.45 +0.5 4,417,648 + -0.3 4,417,649 - -0.1 4,417,877 + PP_3906 0.73 +0.5 4,417,878 - PP_3906 0.74 -1.4 4,417,878 - PP_3906 0.74 -0.1 4,417,878 - PP_3906 0.74 -1.0 4,418,093 + PP_3907 0.32 -0.6 4,418,093 + PP_3907 0.32 -1.3 4,418,093 + PP_3907 0.32 -0.2 4,418,094 - PP_3907 0.32 -2.3 4,418,094 - PP_3907 0.32 -0.7
Or see this region's nucleotide sequence