Strain Fitness in Pseudomonas putida KT2440 around PP_0265

Experiment: Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPP_0264 and PP_0265 are separated by 42 nucleotidesPP_0265 and PP_0266 are separated by 277 nucleotides PP_0264: PP_0264 - Sensor histidine kinase, at 317,927 to 319,741 _0264 PP_0265: PP_0265 - dTDP-4-dehydrorhamnose 3,5-epimerase, at 319,784 to 320,329 _0265 PP_0266: PP_0266 - Agmatine deiminase, at 320,607 to 321,713 _0266 Position (kb) 319 320 321Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 318.816 kb on + strand, within PP_0264at 318.816 kb on + strand, within PP_0264at 318.816 kb on + strand, within PP_0264at 318.817 kb on - strand, within PP_0264at 318.817 kb on - strand, within PP_0264at 318.860 kb on + strand, within PP_0264at 318.861 kb on - strand, within PP_0264at 318.890 kb on + strand, within PP_0264at 319.191 kb on - strand, within PP_0264at 319.324 kb on - strand, within PP_0264at 319.324 kb on - strand, within PP_0264at 319.413 kb on + strand, within PP_0264at 319.413 kb on + strand, within PP_0264at 319.414 kb on - strand, within PP_0264at 319.414 kb on - strand, within PP_0264at 319.414 kb on - strand, within PP_0264at 319.584 kb on + strandat 319.584 kb on + strandat 319.584 kb on + strandat 319.584 kb on + strandat 319.585 kb on - strandat 319.585 kb on - strandat 319.585 kb on - strandat 319.585 kb on - strandat 319.629 kb on + strandat 319.629 kb on + strandat 319.629 kb on + strandat 319.632 kb on + strandat 319.632 kb on + strandat 319.632 kb on + strandat 319.633 kb on - strandat 319.633 kb on - strandat 319.662 kb on - strandat 319.662 kb on - strandat 319.662 kb on - strandat 319.664 kb on + strandat 319.664 kb on + strandat 319.664 kb on + strandat 319.664 kb on + strandat 319.665 kb on - strandat 319.774 kb on + strandat 319.775 kb on - strandat 319.775 kb on - strandat 319.775 kb on - strandat 319.781 kb on + strandat 319.781 kb on + strandat 319.782 kb on - strandat 319.782 kb on - strandat 319.786 kb on - strandat 319.786 kb on - strandat 319.897 kb on + strand, within PP_0265at 319.898 kb on - strand, within PP_0265at 319.920 kb on + strand, within PP_0265at 319.920 kb on + strand, within PP_0265at 319.920 kb on + strand, within PP_0265at 319.923 kb on + strand, within PP_0265at 319.924 kb on - strand, within PP_0265at 319.924 kb on - strand, within PP_0265at 319.938 kb on + strand, within PP_0265at 320.143 kb on - strand, within PP_0265at 320.297 kb on + strandat 320.298 kb on - strandat 320.298 kb on - strandat 320.298 kb on - strandat 320.298 kb on - strandat 320.314 kb on + strandat 320.356 kb on + strandat 320.357 kb on - strandat 320.357 kb on - strandat 320.357 kb on - strandat 320.357 kb on - strandat 320.366 kb on - strandat 320.366 kb on - strandat 320.395 kb on - strandat 320.412 kb on + strandat 320.412 kb on + strandat 320.412 kb on + strandat 320.412 kb on + strandat 320.413 kb on - strandat 320.413 kb on - strandat 320.413 kb on - strandat 320.413 kb on - strandat 320.413 kb on - strandat 320.423 kb on + strandat 320.423 kb on + strandat 320.424 kb on - strandat 320.424 kb on - strandat 320.428 kb on + strandat 320.681 kb on - strandat 320.681 kb on - strandat 320.681 kb on - strandat 320.749 kb on + strand, within PP_0266at 320.900 kb on + strand, within PP_0266at 320.900 kb on + strand, within PP_0266at 320.938 kb on + strand, within PP_0266at 320.938 kb on + strand, within PP_0266at 320.938 kb on + strand, within PP_0266at 320.939 kb on - strand, within PP_0266at 320.982 kb on + strand, within PP_0266at 320.982 kb on + strand, within PP_0266at 320.982 kb on + strand, within PP_0266at 321.091 kb on + strand, within PP_0266at 321.091 kb on + strand, within PP_0266at 321.092 kb on - strandat 321.214 kb on + strand, within PP_0266at 321.214 kb on + strand, within PP_0266at 321.215 kb on - strand, within PP_0266at 321.234 kb on + strand, within PP_0266at 321.234 kb on + strand, within PP_0266at 321.235 kb on - strand, within PP_0266at 321.276 kb on + strand, within PP_0266at 321.276 kb on + strand, within PP_0266at 321.299 kb on - strand, within PP_0266at 321.299 kb on - strand, within PP_0266at 321.299 kb on - strand, within PP_0266

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs
remove
318,816 + PP_0264 0.49 +1.6
318,816 + PP_0264 0.49 -1.1
318,816 + PP_0264 0.49 -0.4
318,817 - PP_0264 0.49 -1.0
318,817 - PP_0264 0.49 -0.0
318,860 + PP_0264 0.51 +1.1
318,861 - PP_0264 0.51 -1.6
318,890 + PP_0264 0.53 -1.7
319,191 - PP_0264 0.70 -1.6
319,324 - PP_0264 0.77 -1.0
319,324 - PP_0264 0.77 +0.2
319,413 + PP_0264 0.82 -1.4
319,413 + PP_0264 0.82 -1.6
319,414 - PP_0264 0.82 -1.1
319,414 - PP_0264 0.82 -1.0
319,414 - PP_0264 0.82 -1.3
319,584 + +0.6
319,584 + -0.4
319,584 + -1.7
319,584 + -1.3
319,585 - -0.3
319,585 - -1.3
319,585 - -1.7
319,585 - -0.9
319,629 + -0.7
319,629 + -1.4
319,629 + +1.0
319,632 + -0.1
319,632 + -0.8
319,632 + -0.9
319,633 - +1.4
319,633 - +0.7
319,662 - -0.8
319,662 - +0.9
319,662 - +0.7
319,664 + -1.6
319,664 + +0.9
319,664 + +2.1
319,664 + +0.5
319,665 - -1.5
319,774 + -1.5
319,775 - -2.6
319,775 - -2.2
319,775 - +0.0
319,781 + +0.1
319,781 + -0.9
319,782 - +0.7
319,782 - -1.3
319,786 - +0.5
319,786 - +0.8
319,897 + PP_0265 0.21 -1.3
319,898 - PP_0265 0.21 -2.0
319,920 + PP_0265 0.25 -1.9
319,920 + PP_0265 0.25 +0.8
319,920 + PP_0265 0.25 -0.2
319,923 + PP_0265 0.25 -0.4
319,924 - PP_0265 0.26 -0.2
319,924 - PP_0265 0.26 +0.0
319,938 + PP_0265 0.28 -1.9
320,143 - PP_0265 0.66 -0.3
320,297 + -0.6
320,298 - -1.8
320,298 - -0.2
320,298 - +0.5
320,298 - +0.7
320,314 + +0.3
320,356 + +0.7
320,357 - +0.9
320,357 - -0.5
320,357 - -1.4
320,357 - -2.8
320,366 - -0.3
320,366 - +0.1
320,395 - -0.6
320,412 + +0.2
320,412 + -0.1
320,412 + -0.9
320,412 + -0.8
320,413 - -1.7
320,413 - -0.0
320,413 - +0.6
320,413 - +0.2
320,413 - -0.2
320,423 + -0.6
320,423 + +0.5
320,424 - -1.1
320,424 - +0.4
320,428 + -1.9
320,681 - +0.4
320,681 - +0.4
320,681 - +0.5
320,749 + PP_0266 0.13 -1.3
320,900 + PP_0266 0.26 -0.7
320,900 + PP_0266 0.26 -0.8
320,938 + PP_0266 0.30 -0.9
320,938 + PP_0266 0.30 -0.4
320,938 + PP_0266 0.30 -0.5
320,939 - PP_0266 0.30 +1.5
320,982 + PP_0266 0.34 +0.2
320,982 + PP_0266 0.34 -0.4
320,982 + PP_0266 0.34 -1.3
321,091 + PP_0266 0.44 +1.3
321,091 + PP_0266 0.44 +0.0
321,092 - +1.3
321,214 + PP_0266 0.55 -0.3
321,214 + PP_0266 0.55 +1.4
321,215 - PP_0266 0.55 +0.2
321,234 + PP_0266 0.57 +1.3
321,234 + PP_0266 0.57 -0.7
321,235 - PP_0266 0.57 +0.4
321,276 + PP_0266 0.60 -1.5
321,276 + PP_0266 0.60 +0.0
321,299 - PP_0266 0.63 +0.6
321,299 - PP_0266 0.63 +2.2
321,299 - PP_0266 0.63 +0.7

Or see this region's nucleotide sequence