Experiment: Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_3835 and PP_3836 are separated by 84 nucleotides PP_3836 and PP_t45 are separated by 199 nucleotides PP_t45 and PP_3837 are separated by 104 nucleotides PP_3837 and PP_5634 are separated by 1 nucleotides
PP_3835: PP_3835 - Sensory box histidine kinase, at 4,359,961 to 4,361,121
_3835
PP_3836: PP_3836 - conserved protein of unknown function, at 4,361,206 to 4,361,481
_3836
PP_t45: PP_t45 - tRNA-Leu, at 4,361,681 to 4,361,765
_t45
PP_3837: PP_3837 - inner membrane protein of unknown function, at 4,361,870 to 4,362,283
_3837
PP_5634: PP_5634 - conserved protein of unknown function, at 4,362,285 to 4,362,479
_5634
Position (kb) 4361
4362 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4360.607 kb on + strand, within PP_3835 at 4360.608 kb on + strand, within PP_3835 at 4360.609 kb on - strand, within PP_3835 at 4360.609 kb on - strand, within PP_3835 at 4360.609 kb on - strand, within PP_3835 at 4360.740 kb on + strand, within PP_3835 at 4360.965 kb on + strand, within PP_3835 at 4360.965 kb on + strand, within PP_3835 at 4361.033 kb on + strand at 4361.034 kb on - strand at 4361.034 kb on - strand at 4361.034 kb on - strand at 4361.034 kb on - strand at 4361.034 kb on - strand at 4361.042 kb on + strand at 4361.043 kb on - strand at 4361.161 kb on + strand at 4361.289 kb on + strand, within PP_3836 at 4361.289 kb on + strand, within PP_3836 at 4361.290 kb on - strand, within PP_3836 at 4361.290 kb on - strand, within PP_3836 at 4361.313 kb on + strand, within PP_3836 at 4361.314 kb on - strand, within PP_3836 at 4361.314 kb on - strand, within PP_3836 at 4361.314 kb on - strand, within PP_3836 at 4361.314 kb on - strand, within PP_3836 at 4361.314 kb on - strand, within PP_3836 at 4361.360 kb on + strand, within PP_3836 at 4361.361 kb on - strand, within PP_3836 at 4361.387 kb on + strand, within PP_3836 at 4361.388 kb on - strand, within PP_3836 at 4361.388 kb on - strand, within PP_3836 at 4361.437 kb on + strand, within PP_3836 at 4361.483 kb on - strand at 4361.488 kb on - strand at 4361.564 kb on - strand at 4361.576 kb on + strand at 4361.576 kb on + strand at 4361.577 kb on - strand at 4361.834 kb on - strand at 4361.876 kb on + strand at 4361.876 kb on + strand at 4361.876 kb on + strand at 4361.908 kb on + strand at 4361.908 kb on + strand at 4361.909 kb on - strand at 4361.993 kb on + strand, within PP_3837 at 4361.994 kb on - strand, within PP_3837 at 4361.994 kb on - strand, within PP_3837 at 4361.994 kb on - strand, within PP_3837 at 4361.994 kb on - strand, within PP_3837 at 4361.994 kb on - strand at 4362.089 kb on + strand, within PP_3837 at 4362.089 kb on + strand, within PP_3837 at 4362.089 kb on + strand, within PP_3837
Per-strain Table
Position Strand Gene LocusTag Fraction Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs remove 4,360,607 + PP_3835 0.56 -0.3 4,360,608 + PP_3835 0.56 -0.0 4,360,609 - PP_3835 0.56 +0.3 4,360,609 - PP_3835 0.56 +1.2 4,360,609 - PP_3835 0.56 -0.4 4,360,740 + PP_3835 0.67 +0.9 4,360,965 + PP_3835 0.86 -2.1 4,360,965 + PP_3835 0.86 -0.6 4,361,033 + +1.5 4,361,034 - -0.4 4,361,034 - +1.0 4,361,034 - -1.1 4,361,034 - +0.4 4,361,034 - -0.6 4,361,042 + +0.9 4,361,043 - +0.2 4,361,161 + -0.8 4,361,289 + PP_3836 0.30 +0.5 4,361,289 + PP_3836 0.30 +0.7 4,361,290 - PP_3836 0.30 -0.6 4,361,290 - PP_3836 0.30 +0.3 4,361,313 + PP_3836 0.39 +1.3 4,361,314 - PP_3836 0.39 +0.3 4,361,314 - PP_3836 0.39 +0.7 4,361,314 - PP_3836 0.39 -1.4 4,361,314 - PP_3836 0.39 +0.9 4,361,314 - PP_3836 0.39 +0.2 4,361,360 + PP_3836 0.56 +0.8 4,361,361 - PP_3836 0.56 +0.6 4,361,387 + PP_3836 0.66 +0.6 4,361,388 - PP_3836 0.66 -0.7 4,361,388 - PP_3836 0.66 +1.0 4,361,437 + PP_3836 0.84 +0.4 4,361,483 - +0.5 4,361,488 - -0.5 4,361,564 - -2.6 4,361,576 + +0.1 4,361,576 + -0.9 4,361,577 - +1.3 4,361,834 - -1.9 4,361,876 + -1.9 4,361,876 + -1.3 4,361,876 + +0.2 4,361,908 + -0.0 4,361,908 + -1.1 4,361,909 - -0.0 4,361,993 + PP_3837 0.30 -1.4 4,361,994 - PP_3837 0.30 -1.6 4,361,994 - PP_3837 0.30 -0.8 4,361,994 - PP_3837 0.30 +0.3 4,361,994 - PP_3837 0.30 +2.0 4,361,994 - -0.5 4,362,089 + PP_3837 0.53 +0.7 4,362,089 + PP_3837 0.53 +0.5 4,362,089 + PP_3837 0.53 -0.4
Or see this region's nucleotide sequence