Experiment: Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0786 and PP_0787 are separated by 75 nucleotides PP_0787 and PP_0788 are separated by 243 nucleotides
PP_0786: PP_0786 - thioredoxin reductase, at 901,612 to 902,574
_0786
PP_0787: PP_0787 - quinolinate phosphoribosyltransferase (decarboxylating) monomer, at 902,650 to 903,498
_0787
PP_0788: PP_0788 - conserved protein of unknown function, at 903,742 to 905,901
_0788
Position (kb) 902
903
904 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 902.717 kb on + strand at 902.717 kb on + strand at 902.717 kb on + strand at 902.717 kb on + strand at 902.717 kb on + strand at 902.717 kb on + strand at 902.717 kb on + strand at 902.717 kb on + strand at 902.717 kb on + strand at 902.718 kb on - strand at 902.718 kb on - strand at 902.718 kb on - strand at 902.718 kb on - strand at 902.800 kb on - strand, within PP_0787 at 903.008 kb on + strand, within PP_0787 at 903.009 kb on - strand, within PP_0787 at 903.016 kb on + strand, within PP_0787 at 903.016 kb on + strand, within PP_0787 at 903.017 kb on - strand, within PP_0787 at 903.487 kb on + strand at 903.515 kb on + strand at 903.515 kb on + strand at 903.515 kb on + strand at 903.515 kb on + strand at 903.515 kb on + strand at 903.516 kb on - strand at 903.516 kb on - strand at 903.516 kb on - strand at 903.516 kb on - strand at 903.530 kb on - strand at 903.531 kb on + strand at 903.531 kb on + strand at 903.532 kb on - strand at 903.551 kb on + strand at 903.551 kb on + strand at 903.551 kb on + strand at 903.552 kb on - strand at 903.552 kb on - strand at 903.552 kb on - strand at 903.552 kb on - strand at 903.640 kb on + strand at 903.640 kb on + strand at 903.640 kb on + strand at 903.640 kb on + strand at 903.640 kb on + strand at 903.641 kb on - strand at 903.641 kb on - strand at 903.641 kb on - strand at 903.644 kb on + strand at 903.645 kb on - strand at 903.645 kb on - strand at 903.675 kb on + strand at 903.687 kb on + strand at 903.799 kb on - strand at 903.799 kb on - strand at 903.953 kb on - strand at 903.953 kb on - strand at 903.953 kb on - strand at 904.014 kb on + strand, within PP_0788 at 904.015 kb on - strand, within PP_0788 at 904.015 kb on - strand, within PP_0788 at 904.213 kb on + strand, within PP_0788 at 904.214 kb on - strand, within PP_0788 at 904.255 kb on + strand, within PP_0788 at 904.255 kb on + strand, within PP_0788 at 904.275 kb on + strand, within PP_0788 at 904.275 kb on + strand, within PP_0788 at 904.330 kb on + strand, within PP_0788 at 904.331 kb on - strand, within PP_0788 at 904.331 kb on - strand, within PP_0788 at 904.357 kb on + strand, within PP_0788 at 904.358 kb on - strand, within PP_0788 at 904.395 kb on - strand, within PP_0788
Per-strain Table
Position Strand Gene LocusTag Fraction Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs remove 902,717 + -3.7 902,717 + +0.4 902,717 + -0.8 902,717 + -0.9 902,717 + +0.5 902,717 + +0.4 902,717 + -0.3 902,717 + -0.6 902,717 + +0.2 902,718 - -0.5 902,718 - -0.3 902,718 - +0.5 902,718 - -1.7 902,800 - PP_0787 0.18 -2.3 903,008 + PP_0787 0.42 +1.9 903,009 - PP_0787 0.42 +1.2 903,016 + PP_0787 0.43 +0.1 903,016 + PP_0787 0.43 -0.9 903,017 - PP_0787 0.43 -0.1 903,487 + +0.6 903,515 + +2.0 903,515 + +0.5 903,515 + +1.9 903,515 + +1.4 903,515 + +1.0 903,516 - +0.5 903,516 - +0.9 903,516 - +0.7 903,516 - +0.6 903,530 - +0.9 903,531 + +0.3 903,531 + +1.4 903,532 - +0.5 903,551 + +2.3 903,551 + +1.9 903,551 + +0.6 903,552 - -0.1 903,552 - -0.6 903,552 - +0.5 903,552 - +0.1 903,640 + +1.6 903,640 + +1.8 903,640 + +1.6 903,640 + +1.2 903,640 + +1.5 903,641 - -1.8 903,641 - +0.3 903,641 - +0.2 903,644 + +1.3 903,645 - +1.1 903,645 - +0.9 903,675 + +2.1 903,687 + +2.0 903,799 - +0.6 903,799 - +0.7 903,953 - -0.8 903,953 - -0.5 903,953 - -0.5 904,014 + PP_0788 0.13 -0.2 904,015 - PP_0788 0.13 +0.5 904,015 - PP_0788 0.13 -0.4 904,213 + PP_0788 0.22 +0.3 904,214 - PP_0788 0.22 -1.9 904,255 + PP_0788 0.24 +0.2 904,255 + PP_0788 0.24 +0.1 904,275 + PP_0788 0.25 +0.1 904,275 + PP_0788 0.25 -1.0 904,330 + PP_0788 0.27 -1.7 904,331 - PP_0788 0.27 +0.7 904,331 - PP_0788 0.27 -0.6 904,357 + PP_0788 0.28 -0.6 904,358 - PP_0788 0.29 -0.3 904,395 - PP_0788 0.30 -0.3
Or see this region's nucleotide sequence