Experiment: Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0779 and PP_0781 are separated by 207 nucleotides PP_0781 and PP_0782 are separated by 472 nucleotides
PP_0779: PP_0779 - Methyl-accepting chemotaxis transducer/sensory box protein, at 896,569 to 897,909
_0779
PP_0781: PP_0781 - conserved protein of unknown function, at 898,117 to 898,452
_0781
PP_0782: PP_0782 - conserved protein of unknown function, at 898,925 to 899,548
_0782
Position (kb) 898
899 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 897.144 kb on + strand, within PP_0779 at 897.194 kb on - strand, within PP_0779 at 897.229 kb on + strand, within PP_0779 at 897.229 kb on + strand, within PP_0779 at 897.230 kb on - strand, within PP_0779 at 897.230 kb on - strand, within PP_0779 at 897.231 kb on + strand, within PP_0779 at 897.231 kb on + strand, within PP_0779 at 897.231 kb on + strand, within PP_0779 at 897.232 kb on - strand, within PP_0779 at 897.232 kb on - strand, within PP_0779 at 897.232 kb on - strand, within PP_0779 at 897.232 kb on - strand, within PP_0779 at 897.292 kb on + strand, within PP_0779 at 897.292 kb on + strand, within PP_0779 at 897.292 kb on + strand, within PP_0779 at 897.292 kb on + strand, within PP_0779 at 897.293 kb on - strand, within PP_0779 at 897.325 kb on + strand at 897.325 kb on + strand, within PP_0779 at 897.326 kb on - strand, within PP_0779 at 897.326 kb on - strand at 897.326 kb on - strand, within PP_0779 at 897.326 kb on - strand, within PP_0779 at 897.326 kb on - strand, within PP_0779 at 897.326 kb on - strand, within PP_0779 at 897.326 kb on - strand, within PP_0779 at 897.326 kb on - strand, within PP_0779 at 897.406 kb on + strand, within PP_0779 at 897.731 kb on + strand, within PP_0779 at 897.731 kb on + strand, within PP_0779 at 897.833 kb on + strand at 897.833 kb on + strand at 897.833 kb on + strand at 897.833 kb on + strand at 897.910 kb on + strand at 897.911 kb on - strand at 897.979 kb on - strand at 898.329 kb on - strand, within PP_0781 at 898.329 kb on - strand, within PP_0781 at 898.329 kb on - strand, within PP_0781 at 898.483 kb on + strand at 898.901 kb on - strand at 898.935 kb on + strand at 898.935 kb on + strand at 899.165 kb on + strand, within PP_0782 at 899.165 kb on + strand, within PP_0782 at 899.295 kb on + strand, within PP_0782 at 899.296 kb on - strand, within PP_0782 at 899.299 kb on + strand, within PP_0782 at 899.392 kb on + strand, within PP_0782 at 899.393 kb on - strand, within PP_0782 at 899.409 kb on - strand, within PP_0782
Per-strain Table
Position Strand Gene LocusTag Fraction Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs remove 897,144 + PP_0779 0.43 -0.5 897,194 - PP_0779 0.47 +1.2 897,229 + PP_0779 0.49 -0.5 897,229 + PP_0779 0.49 -3.2 897,230 - PP_0779 0.49 +0.2 897,230 - PP_0779 0.49 +0.7 897,231 + PP_0779 0.49 -0.4 897,231 + PP_0779 0.49 +0.8 897,231 + PP_0779 0.49 -2.2 897,232 - PP_0779 0.49 -0.1 897,232 - PP_0779 0.49 +0.1 897,232 - PP_0779 0.49 +0.7 897,232 - PP_0779 0.49 +1.2 897,292 + PP_0779 0.54 +0.9 897,292 + PP_0779 0.54 -0.0 897,292 + PP_0779 0.54 -0.4 897,292 + PP_0779 0.54 +0.5 897,293 - PP_0779 0.54 -0.1 897,325 + +1.0 897,325 + PP_0779 0.56 +0.7 897,326 - PP_0779 0.56 +0.9 897,326 - +1.3 897,326 - PP_0779 0.56 -0.1 897,326 - PP_0779 0.56 +0.0 897,326 - PP_0779 0.56 +1.0 897,326 - PP_0779 0.56 +0.8 897,326 - PP_0779 0.56 -1.7 897,326 - PP_0779 0.56 -2.4 897,406 + PP_0779 0.62 -2.0 897,731 + PP_0779 0.87 +2.7 897,731 + PP_0779 0.87 +0.2 897,833 + -2.0 897,833 + -0.5 897,833 + +0.3 897,833 + -0.8 897,910 + -0.5 897,911 - -0.5 897,979 - -0.5 898,329 - PP_0781 0.63 -0.1 898,329 - PP_0781 0.63 +0.4 898,329 - PP_0781 0.63 +1.1 898,483 + -1.8 898,901 - +0.2 898,935 + +0.1 898,935 + -1.9 899,165 + PP_0782 0.38 -2.0 899,165 + PP_0782 0.38 -2.1 899,295 + PP_0782 0.59 +0.2 899,296 - PP_0782 0.59 +0.1 899,299 + PP_0782 0.60 -1.6 899,392 + PP_0782 0.75 +0.0 899,393 - PP_0782 0.75 +0.2 899,409 - PP_0782 0.78 +0.3
Or see this region's nucleotide sequence