Experiment: Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0555 and PP_0556 are separated by 22 nucleotides PP_0556 and PP_0557 are separated by 283 nucleotides
PP_0555: PP_0555 - Acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit alpha, at 644,039 to 645,016
_0555
PP_0556: PP_0556 - Acetoin catabolism protein, at 645,039 to 646,094
_0556
PP_0557: PP_0557 - Acetoin catabolism regulatory protein, at 646,378 to 648,231
_0557
Position (kb) 645
646
647 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 644.055 kb on + strand at 644.259 kb on + strand, within PP_0555 at 644.289 kb on + strand, within PP_0555 at 644.289 kb on + strand, within PP_0555 at 644.289 kb on + strand, within PP_0555 at 644.292 kb on + strand, within PP_0555 at 644.370 kb on + strand, within PP_0555 at 644.371 kb on - strand, within PP_0555 at 644.371 kb on - strand, within PP_0555 at 644.372 kb on + strand, within PP_0555 at 644.485 kb on - strand, within PP_0555 at 644.754 kb on + strand, within PP_0555 at 644.755 kb on - strand, within PP_0555 at 644.889 kb on + strand, within PP_0555 at 644.890 kb on - strand, within PP_0555 at 644.890 kb on - strand, within PP_0555 at 644.976 kb on + strand at 644.976 kb on + strand at 644.977 kb on - strand at 644.999 kb on - strand at 644.999 kb on - strand at 644.999 kb on - strand at 645.349 kb on - strand, within PP_0556 at 645.561 kb on + strand, within PP_0556 at 645.561 kb on + strand, within PP_0556 at 645.562 kb on - strand, within PP_0556 at 646.107 kb on - strand at 646.175 kb on + strand at 646.331 kb on - strand at 646.331 kb on - strand at 646.348 kb on - strand at 646.504 kb on + strand at 646.648 kb on + strand, within PP_0557 at 646.649 kb on - strand, within PP_0557 at 646.649 kb on - strand, within PP_0557 at 646.649 kb on - strand, within PP_0557 at 646.662 kb on + strand, within PP_0557 at 646.738 kb on + strand, within PP_0557 at 646.738 kb on + strand, within PP_0557 at 646.739 kb on - strand, within PP_0557 at 646.913 kb on + strand, within PP_0557 at 646.913 kb on + strand, within PP_0557 at 646.913 kb on + strand, within PP_0557 at 646.913 kb on + strand, within PP_0557 at 646.914 kb on - strand, within PP_0557 at 646.914 kb on - strand, within PP_0557 at 646.914 kb on - strand, within PP_0557 at 646.914 kb on - strand, within PP_0557 at 647.065 kb on + strand, within PP_0557 at 647.066 kb on - strand, within PP_0557 at 647.066 kb on - strand, within PP_0557 at 647.086 kb on + strand, within PP_0557 at 647.086 kb on + strand, within PP_0557 at 647.087 kb on - strand, within PP_0557
Per-strain Table
Position Strand Gene LocusTag Fraction Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs remove 644,055 + +0.9 644,259 + PP_0555 0.22 +1.3 644,289 + PP_0555 0.26 -1.0 644,289 + PP_0555 0.26 -1.2 644,289 + PP_0555 0.26 +0.9 644,292 + PP_0555 0.26 +0.2 644,370 + PP_0555 0.34 -1.2 644,371 - PP_0555 0.34 +0.6 644,371 - PP_0555 0.34 -0.7 644,372 + PP_0555 0.34 -0.6 644,485 - PP_0555 0.46 -1.3 644,754 + PP_0555 0.73 -0.0 644,755 - PP_0555 0.73 -0.1 644,889 + PP_0555 0.87 +0.9 644,890 - PP_0555 0.87 -0.7 644,890 - PP_0555 0.87 -1.1 644,976 + -0.2 644,976 + -0.3 644,977 - -0.3 644,999 - -0.4 644,999 - -2.8 644,999 - +2.3 645,349 - PP_0556 0.29 -0.1 645,561 + PP_0556 0.49 +1.6 645,561 + PP_0556 0.49 -0.3 645,562 - PP_0556 0.50 +0.0 646,107 - +0.2 646,175 + -0.4 646,331 - +0.4 646,331 - -0.1 646,348 - -0.3 646,504 + -0.8 646,648 + PP_0557 0.15 -0.3 646,649 - PP_0557 0.15 +0.1 646,649 - PP_0557 0.15 -1.0 646,649 - PP_0557 0.15 -0.7 646,662 + PP_0557 0.15 +1.5 646,738 + PP_0557 0.19 +0.3 646,738 + PP_0557 0.19 -1.9 646,739 - PP_0557 0.19 -0.5 646,913 + PP_0557 0.29 +1.3 646,913 + PP_0557 0.29 -0.6 646,913 + PP_0557 0.29 -0.7 646,913 + PP_0557 0.29 +0.1 646,914 - PP_0557 0.29 +0.1 646,914 - PP_0557 0.29 +0.1 646,914 - PP_0557 0.29 -0.2 646,914 - PP_0557 0.29 -0.4 647,065 + PP_0557 0.37 +0.4 647,066 - PP_0557 0.37 +0.2 647,066 - PP_0557 0.37 -0.9 647,086 + PP_0557 0.38 +0.7 647,086 + PP_0557 0.38 +0.5 647,087 - PP_0557 0.38 -0.7
Or see this region's nucleotide sequence