Experiment: R2A with Fusaric 120 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_03135 and PS417_03140 are separated by 2 nucleotides PS417_03140 and PS417_03145 are separated by 114 nucleotides
PS417_03135: PS417_03135 - acyl dehydratase, at 719,558 to 720,406
_03135
PS417_03140: PS417_03140 - 3-ketoacyl-ACP reductase, at 720,409 to 721,752
_03140
PS417_03145: PS417_03145 - acetyl-CoA acetyltransferase, at 721,867 to 723,144
_03145
Position (kb) 720
721
722 Strain fitness (log2 ratio) -1
0
1
2 at 719.534 kb on - strand at 719.535 kb on + strand at 719.535 kb on + strand at 719.535 kb on + strand at 719.537 kb on + strand at 719.539 kb on + strand at 719.587 kb on + strand at 719.657 kb on + strand, within PS417_03135 at 719.657 kb on + strand, within PS417_03135 at 719.658 kb on - strand, within PS417_03135 at 719.987 kb on + strand, within PS417_03135 at 719.987 kb on + strand, within PS417_03135 at 719.987 kb on + strand, within PS417_03135 at 720.213 kb on + strand, within PS417_03135 at 720.214 kb on - strand, within PS417_03135 at 720.214 kb on - strand, within PS417_03135 at 720.383 kb on - strand at 720.383 kb on - strand at 720.383 kb on - strand at 720.410 kb on + strand at 720.410 kb on + strand at 720.410 kb on + strand at 720.411 kb on - strand at 720.411 kb on - strand at 720.574 kb on - strand, within PS417_03140 at 721.194 kb on + strand, within PS417_03140 at 721.196 kb on + strand, within PS417_03140 at 721.196 kb on + strand, within PS417_03140 at 721.196 kb on + strand, within PS417_03140 at 721.197 kb on - strand, within PS417_03140 at 721.197 kb on - strand, within PS417_03140 at 721.197 kb on - strand, within PS417_03140 at 721.547 kb on + strand, within PS417_03140 at 721.553 kb on + strand, within PS417_03140 at 721.553 kb on + strand, within PS417_03140 at 721.554 kb on - strand, within PS417_03140 at 721.738 kb on - strand at 721.739 kb on + strand at 721.739 kb on + strand at 721.887 kb on - strand at 721.997 kb on - strand, within PS417_03145 at 722.673 kb on - strand, within PS417_03145
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Fusaric 120 ug/mL remove 719,534 - -0.1 719,535 + +1.3 719,535 + +0.3 719,535 + -0.7 719,537 + +0.5 719,539 + -0.8 719,587 + +0.3 719,657 + PS417_03135 0.12 -0.4 719,657 + PS417_03135 0.12 -0.6 719,658 - PS417_03135 0.12 +0.1 719,987 + PS417_03135 0.51 +0.1 719,987 + PS417_03135 0.51 +0.1 719,987 + PS417_03135 0.51 +0.2 720,213 + PS417_03135 0.77 -0.9 720,214 - PS417_03135 0.77 -1.4 720,214 - PS417_03135 0.77 -0.1 720,383 - +2.1 720,383 - -0.1 720,383 - -0.5 720,410 + -0.4 720,410 + +0.6 720,410 + +0.0 720,411 - -1.0 720,411 - +0.6 720,574 - PS417_03140 0.12 -1.2 721,194 + PS417_03140 0.58 +0.2 721,196 + PS417_03140 0.59 -1.1 721,196 + PS417_03140 0.59 +0.0 721,196 + PS417_03140 0.59 -1.7 721,197 - PS417_03140 0.59 +1.7 721,197 - PS417_03140 0.59 -0.3 721,197 - PS417_03140 0.59 -1.3 721,547 + PS417_03140 0.85 -0.9 721,553 + PS417_03140 0.85 -1.7 721,553 + PS417_03140 0.85 -0.3 721,554 - PS417_03140 0.85 -0.4 721,738 - +1.0 721,739 + -1.7 721,739 + -1.0 721,887 - +0.5 721,997 - PS417_03145 0.10 +0.1 722,673 - PS417_03145 0.63 -0.3
Or see this region's nucleotide sequence