Experiment: R2A with Fusaric 120 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_26935 and PS417_26940 are separated by 22 nucleotides PS417_26940 and PS417_26945 are separated by 1 nucleotides
PS417_26935: PS417_26935 - phosphonate ABC transporter substrate-binding protein, at 5,816,442 to 5,817,455
_26935
PS417_26940: PS417_26940 - phosphonate ABC transporter permease, at 5,817,478 to 5,819,190
_26940
PS417_26945: PS417_26945 - sulfate ABC transporter ATP-binding protein, at 5,819,192 to 5,820,256
_26945
Position (kb) 5817
5818
5819
5820 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5816.617 kb on + strand, within PS417_26935 at 5816.618 kb on - strand, within PS417_26935 at 5816.890 kb on + strand, within PS417_26935 at 5816.890 kb on + strand, within PS417_26935 at 5816.891 kb on - strand, within PS417_26935 at 5816.891 kb on - strand, within PS417_26935 at 5816.891 kb on - strand, within PS417_26935 at 5817.163 kb on + strand, within PS417_26935 at 5817.163 kb on + strand, within PS417_26935 at 5817.373 kb on + strand at 5817.374 kb on - strand at 5817.668 kb on + strand, within PS417_26940 at 5817.717 kb on - strand, within PS417_26940 at 5817.780 kb on - strand, within PS417_26940 at 5817.959 kb on + strand, within PS417_26940 at 5817.959 kb on + strand, within PS417_26940 at 5817.960 kb on - strand, within PS417_26940 at 5818.283 kb on + strand, within PS417_26940 at 5818.283 kb on + strand, within PS417_26940 at 5818.464 kb on - strand, within PS417_26940 at 5818.464 kb on - strand, within PS417_26940 at 5818.488 kb on - strand, within PS417_26940 at 5818.541 kb on - strand, within PS417_26940 at 5818.588 kb on - strand, within PS417_26940 at 5818.588 kb on - strand, within PS417_26940 at 5818.588 kb on - strand, within PS417_26940 at 5818.590 kb on + strand, within PS417_26940 at 5818.703 kb on + strand, within PS417_26940 at 5818.704 kb on - strand, within PS417_26940 at 5818.704 kb on - strand, within PS417_26940 at 5818.740 kb on - strand, within PS417_26940 at 5818.740 kb on - strand, within PS417_26940 at 5818.740 kb on - strand, within PS417_26940 at 5818.743 kb on + strand, within PS417_26940 at 5818.743 kb on + strand, within PS417_26940 at 5818.743 kb on + strand, within PS417_26940 at 5818.743 kb on + strand, within PS417_26940 at 5818.790 kb on + strand, within PS417_26940 at 5818.904 kb on + strand, within PS417_26940 at 5818.905 kb on - strand, within PS417_26940 at 5818.953 kb on + strand, within PS417_26940 at 5819.527 kb on + strand, within PS417_26945 at 5819.527 kb on + strand at 5819.528 kb on - strand, within PS417_26945 at 5819.574 kb on + strand, within PS417_26945 at 5819.575 kb on - strand, within PS417_26945 at 5819.575 kb on - strand, within PS417_26945 at 5819.575 kb on - strand, within PS417_26945 at 5819.575 kb on - strand, within PS417_26945 at 5819.595 kb on + strand, within PS417_26945 at 5819.909 kb on + strand, within PS417_26945 at 5819.910 kb on - strand, within PS417_26945 at 5820.052 kb on - strand, within PS417_26945 at 5820.052 kb on - strand, within PS417_26945
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Fusaric 120 ug/mL remove 5,816,617 + PS417_26935 0.17 -0.5 5,816,618 - PS417_26935 0.17 -0.4 5,816,890 + PS417_26935 0.44 +0.4 5,816,890 + PS417_26935 0.44 -0.3 5,816,891 - PS417_26935 0.44 -0.2 5,816,891 - PS417_26935 0.44 -0.0 5,816,891 - PS417_26935 0.44 -0.6 5,817,163 + PS417_26935 0.71 +0.4 5,817,163 + PS417_26935 0.71 -0.1 5,817,373 + -0.9 5,817,374 - +0.4 5,817,668 + PS417_26940 0.11 -2.6 5,817,717 - PS417_26940 0.14 -0.8 5,817,780 - PS417_26940 0.18 -0.8 5,817,959 + PS417_26940 0.28 -0.9 5,817,959 + PS417_26940 0.28 -0.9 5,817,960 - PS417_26940 0.28 -0.9 5,818,283 + PS417_26940 0.47 +0.1 5,818,283 + PS417_26940 0.47 -0.5 5,818,464 - PS417_26940 0.58 -1.3 5,818,464 - PS417_26940 0.58 +0.2 5,818,488 - PS417_26940 0.59 +0.6 5,818,541 - PS417_26940 0.62 -0.6 5,818,588 - PS417_26940 0.65 +0.4 5,818,588 - PS417_26940 0.65 -0.8 5,818,588 - PS417_26940 0.65 -0.5 5,818,590 + PS417_26940 0.65 -0.1 5,818,703 + PS417_26940 0.72 -0.2 5,818,704 - PS417_26940 0.72 -0.5 5,818,704 - PS417_26940 0.72 -0.9 5,818,740 - PS417_26940 0.74 -0.5 5,818,740 - PS417_26940 0.74 -1.4 5,818,740 - PS417_26940 0.74 -0.4 5,818,743 + PS417_26940 0.74 -0.2 5,818,743 + PS417_26940 0.74 +0.4 5,818,743 + PS417_26940 0.74 -2.7 5,818,743 + PS417_26940 0.74 -0.3 5,818,790 + PS417_26940 0.77 +0.1 5,818,904 + PS417_26940 0.83 +0.2 5,818,905 - PS417_26940 0.83 -0.0 5,818,953 + PS417_26940 0.86 -0.6 5,819,527 + PS417_26945 0.31 -0.1 5,819,527 + -0.4 5,819,528 - PS417_26945 0.32 -0.6 5,819,574 + PS417_26945 0.36 -0.6 5,819,575 - PS417_26945 0.36 -1.8 5,819,575 - PS417_26945 0.36 +0.1 5,819,575 - PS417_26945 0.36 -0.7 5,819,575 - PS417_26945 0.36 +0.9 5,819,595 + PS417_26945 0.38 +0.6 5,819,909 + PS417_26945 0.67 +2.2 5,819,910 - PS417_26945 0.67 -1.6 5,820,052 - PS417_26945 0.81 -2.4 5,820,052 - PS417_26945 0.81 -0.4
Or see this region's nucleotide sequence