Experiment: R2A with Fusaric 120 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_26560 and PS417_26565 are separated by 108 nucleotides PS417_26565 and PS417_26570 are separated by 42 nucleotides PS417_26570 and PS417_26575 are separated by 145 nucleotides
PS417_26560: PS417_26560 - amino acid dehydrogenase, at 5,743,631 to 5,744,854
_26560
PS417_26565: PS417_26565 - LysR family transcriptional regulator, at 5,744,963 to 5,745,865
_26565
PS417_26570: PS417_26570 - hemolysin III, at 5,745,908 to 5,746,525
_26570
PS417_26575: PS417_26575 - LysR family transcriptional regulator, at 5,746,671 to 5,747,591
_26575
Position (kb) 5744
5745
5746 Strain fitness (log2 ratio) -2
-1
0
1 at 5744.042 kb on + strand, within PS417_26560 at 5744.043 kb on - strand, within PS417_26560 at 5744.173 kb on + strand, within PS417_26560 at 5744.215 kb on + strand, within PS417_26560 at 5744.215 kb on + strand, within PS417_26560 at 5744.215 kb on + strand, within PS417_26560 at 5744.301 kb on + strand, within PS417_26560 at 5744.301 kb on + strand, within PS417_26560 at 5744.301 kb on + strand, within PS417_26560 at 5744.301 kb on + strand, within PS417_26560 at 5744.938 kb on + strand at 5744.939 kb on - strand at 5744.945 kb on + strand at 5745.480 kb on - strand, within PS417_26565 at 5745.587 kb on + strand, within PS417_26565 at 5745.587 kb on + strand, within PS417_26565 at 5745.587 kb on + strand, within PS417_26565 at 5745.767 kb on + strand, within PS417_26565 at 5745.802 kb on + strand at 5745.850 kb on - strand at 5745.864 kb on - strand at 5745.918 kb on + strand at 5745.918 kb on + strand at 5745.918 kb on + strand at 5745.919 kb on - strand at 5745.919 kb on - strand at 5745.919 kb on - strand at 5745.919 kb on - strand at 5745.976 kb on + strand, within PS417_26570 at 5746.018 kb on + strand, within PS417_26570 at 5746.032 kb on + strand, within PS417_26570 at 5746.032 kb on + strand, within PS417_26570 at 5746.032 kb on + strand, within PS417_26570 at 5746.032 kb on + strand, within PS417_26570 at 5746.033 kb on - strand, within PS417_26570 at 5746.061 kb on - strand, within PS417_26570 at 5746.270 kb on - strand, within PS417_26570 at 5746.291 kb on - strand, within PS417_26570 at 5746.291 kb on - strand, within PS417_26570 at 5746.351 kb on - strand, within PS417_26570 at 5746.368 kb on + strand, within PS417_26570 at 5746.384 kb on + strand, within PS417_26570 at 5746.385 kb on - strand, within PS417_26570 at 5746.385 kb on - strand, within PS417_26570 at 5746.393 kb on - strand, within PS417_26570 at 5746.393 kb on - strand, within PS417_26570 at 5746.393 kb on - strand, within PS417_26570 at 5746.521 kb on + strand at 5746.521 kb on + strand at 5746.521 kb on + strand at 5746.522 kb on - strand at 5746.602 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Fusaric 120 ug/mL remove 5,744,042 + PS417_26560 0.34 -0.1 5,744,043 - PS417_26560 0.34 -1.3 5,744,173 + PS417_26560 0.44 -0.1 5,744,215 + PS417_26560 0.48 -0.3 5,744,215 + PS417_26560 0.48 -0.2 5,744,215 + PS417_26560 0.48 -0.3 5,744,301 + PS417_26560 0.55 +0.7 5,744,301 + PS417_26560 0.55 -0.1 5,744,301 + PS417_26560 0.55 +0.6 5,744,301 + PS417_26560 0.55 -0.4 5,744,938 + -1.2 5,744,939 - -1.1 5,744,945 + -2.2 5,745,480 - PS417_26565 0.57 -0.9 5,745,587 + PS417_26565 0.69 -2.0 5,745,587 + PS417_26565 0.69 -1.3 5,745,587 + PS417_26565 0.69 -0.7 5,745,767 + PS417_26565 0.89 -0.3 5,745,802 + +0.2 5,745,850 - +0.1 5,745,864 - -0.5 5,745,918 + -1.4 5,745,918 + -0.1 5,745,918 + -0.2 5,745,919 - -0.1 5,745,919 - -0.2 5,745,919 - -1.4 5,745,919 - -0.2 5,745,976 + PS417_26570 0.11 -0.2 5,746,018 + PS417_26570 0.18 -0.0 5,746,032 + PS417_26570 0.20 +0.4 5,746,032 + PS417_26570 0.20 +0.4 5,746,032 + PS417_26570 0.20 -1.3 5,746,032 + PS417_26570 0.20 -0.1 5,746,033 - PS417_26570 0.20 +0.4 5,746,061 - PS417_26570 0.25 +0.7 5,746,270 - PS417_26570 0.59 -0.7 5,746,291 - PS417_26570 0.62 +0.4 5,746,291 - PS417_26570 0.62 +1.0 5,746,351 - PS417_26570 0.72 -0.4 5,746,368 + PS417_26570 0.74 -0.1 5,746,384 + PS417_26570 0.77 -0.1 5,746,385 - PS417_26570 0.77 -0.3 5,746,385 - PS417_26570 0.77 +1.2 5,746,393 - PS417_26570 0.78 +0.0 5,746,393 - PS417_26570 0.78 -0.6 5,746,393 - PS417_26570 0.78 +0.9 5,746,521 + -0.2 5,746,521 + +0.6 5,746,521 + +0.3 5,746,522 - +0.0 5,746,602 - -0.6
Or see this region's nucleotide sequence