Strain Fitness in Pseudomonas simiae WCS417 around PS417_25310

Experiment: R2A with Fusaric 120 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_25305 and PS417_25310 are separated by 11 nucleotidesPS417_25310 and PS417_25315 are separated by 94 nucleotidesPS417_25315 and PS417_25320 are separated by 64 nucleotides PS417_25305: PS417_25305 - peptide ABC transporter permease, at 5,479,065 to 5,480,330 _25305 PS417_25310: PS417_25310 - hypothetical protein, at 5,480,342 to 5,480,854 _25310 PS417_25315: PS417_25315 - membrane protein, at 5,480,949 to 5,481,647 _25315 PS417_25320: PS417_25320 - dTDP-4-dehydrorhamnose reductase, at 5,481,712 to 5,482,581 _25320 Position (kb) 5480 5481Strain fitness (log2 ratio) -2 -1 0 1 2at 5479.536 kb on + strand, within PS417_25305at 5479.536 kb on + strand, within PS417_25305at 5479.536 kb on + strand, within PS417_25305at 5479.537 kb on - strand, within PS417_25305at 5479.573 kb on + strand, within PS417_25305at 5479.906 kb on + strand, within PS417_25305at 5479.906 kb on + strand, within PS417_25305at 5479.906 kb on + strand, within PS417_25305at 5480.047 kb on + strand, within PS417_25305at 5480.048 kb on - strand, within PS417_25305at 5480.048 kb on - strand, within PS417_25305at 5480.048 kb on - strand, within PS417_25305at 5480.067 kb on - strand, within PS417_25305at 5480.139 kb on + strand, within PS417_25305at 5480.140 kb on - strand, within PS417_25305at 5480.320 kb on + strandat 5480.321 kb on - strandat 5480.738 kb on + strand, within PS417_25310at 5480.739 kb on - strand, within PS417_25310at 5480.739 kb on - strand, within PS417_25310at 5480.747 kb on + strand, within PS417_25310at 5480.837 kb on + strandat 5480.837 kb on + strandat 5480.837 kb on + strandat 5480.837 kb on + strandat 5480.837 kb on + strandat 5480.838 kb on - strandat 5480.838 kb on - strandat 5480.838 kb on - strandat 5480.920 kb on - strandat 5481.007 kb on + strandat 5481.007 kb on + strandat 5481.174 kb on + strand, within PS417_25315at 5481.175 kb on - strand, within PS417_25315at 5481.319 kb on - strand, within PS417_25315at 5481.321 kb on + strand, within PS417_25315at 5481.322 kb on - strand, within PS417_25315at 5481.355 kb on - strand, within PS417_25315at 5481.376 kb on - strand, within PS417_25315at 5481.376 kb on - strand, within PS417_25315at 5481.483 kb on + strand, within PS417_25315at 5481.483 kb on + strand, within PS417_25315at 5481.483 kb on + strand, within PS417_25315at 5481.484 kb on - strand, within PS417_25315at 5481.526 kb on - strand, within PS417_25315at 5481.619 kb on - strandat 5481.619 kb on - strandat 5481.619 kb on - strandat 5481.646 kb on - strandat 5481.709 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Fusaric 120 ug/mL
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5,479,536 + PS417_25305 0.37 +0.9
5,479,536 + PS417_25305 0.37 -0.0
5,479,536 + PS417_25305 0.37 +0.5
5,479,537 - PS417_25305 0.37 +1.1
5,479,573 + PS417_25305 0.40 +0.2
5,479,906 + PS417_25305 0.66 +1.3
5,479,906 + PS417_25305 0.66 +0.3
5,479,906 + PS417_25305 0.66 +0.3
5,480,047 + PS417_25305 0.78 +0.7
5,480,048 - PS417_25305 0.78 +0.1
5,480,048 - PS417_25305 0.78 +0.3
5,480,048 - PS417_25305 0.78 +0.1
5,480,067 - PS417_25305 0.79 +0.3
5,480,139 + PS417_25305 0.85 +0.4
5,480,140 - PS417_25305 0.85 +0.7
5,480,320 + +1.1
5,480,321 - +1.2
5,480,738 + PS417_25310 0.77 -1.4
5,480,739 - PS417_25310 0.77 -0.5
5,480,739 - PS417_25310 0.77 -0.9
5,480,747 + PS417_25310 0.79 -0.6
5,480,837 + -0.3
5,480,837 + +0.8
5,480,837 + +0.1
5,480,837 + +0.6
5,480,837 + -0.1
5,480,838 - +0.3
5,480,838 - -0.1
5,480,838 - +0.0
5,480,920 - +0.5
5,481,007 + -2.3
5,481,007 + -0.9
5,481,174 + PS417_25315 0.32 -0.4
5,481,175 - PS417_25315 0.32 +1.6
5,481,319 - PS417_25315 0.53 +0.3
5,481,321 + PS417_25315 0.53 -0.5
5,481,322 - PS417_25315 0.53 +0.1
5,481,355 - PS417_25315 0.58 +1.2
5,481,376 - PS417_25315 0.61 +0.3
5,481,376 - PS417_25315 0.61 +2.6
5,481,483 + PS417_25315 0.76 +0.8
5,481,483 + PS417_25315 0.76 +1.3
5,481,483 + PS417_25315 0.76 +1.0
5,481,484 - PS417_25315 0.77 -1.4
5,481,526 - PS417_25315 0.83 -0.9
5,481,619 - +0.1
5,481,619 - +1.1
5,481,619 - -1.8
5,481,646 - -0.4
5,481,709 + -0.1

Or see this region's nucleotide sequence