Strain Fitness in Pseudomonas simiae WCS417 around PS417_12745
Experiment: R2A with Fusaric 120 ug/mL
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
| Position | Strand | Gene | LocusTag | Fraction | R2A with Fusaric 120 ug/mL |
|---|---|---|---|---|---|
| remove | |||||
| 2,778,341 | + | PS417_12740 | 0.29 | -0.0 | |
| 2,778,438 | - | PS417_12740 | 0.37 | -0.2 | |
| 2,778,452 | - | PS417_12740 | 0.38 | -0.7 | |
| 2,778,452 | - | PS417_12740 | 0.38 | -0.6 | |
| 2,779,640 | - | PS417_12745 | 0.12 | +0.8 | |
| 2,779,997 | - | PS417_12745 | 0.24 | -0.2 | |
| 2,780,803 | + | PS417_12745 | 0.50 | +1.0 | |
| 2,780,890 | + | PS417_12745 | 0.53 | -1.6 | |
| 2,781,386 | - | PS417_12745 | 0.69 | +0.2 | |
| 2,781,454 | + | PS417_12745 | 0.71 | -1.7 | |
| 2,781,455 | - | PS417_12745 | 0.71 | -0.4 | |
| 2,781,490 | + | PS417_12745 | 0.72 | -0.4 | |
| 2,781,862 | + | PS417_12745 | 0.84 | -1.0 | |
| 2,781,892 | + | PS417_12745 | 0.85 | -0.8 | |
| 2,781,893 | - | PS417_12745 | 0.85 | -0.8 | |
| 2,781,893 | - | PS417_12745 | 0.85 | -0.3 | |
| 2,781,893 | - | PS417_12745 | 0.85 | -1.2 | |
| 2,781,893 | - | PS417_12745 | 0.85 | -0.8 | |
| 2,782,286 | - | -1.1 | |||
| 2,782,816 | - | PS417_12750 | 0.15 | -1.2 | |
| 2,783,074 | - | PS417_12750 | 0.23 | -0.1 |
Or see this region's nucleotide sequence