Experiment: R2A with Fusaric 120 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_11055 and PS417_11060 are separated by 101 nucleotides PS417_11060 and PS417_11065 are separated by 91 nucleotides
PS417_11055: PS417_11055 - AraC family transcriptional regulator, at 2,369,538 to 2,370,500
_11055
PS417_11060: PS417_11060 - transporter, at 2,370,602 to 2,371,825
_11060
PS417_11065: PS417_11065 - S-transferase, at 2,371,917 to 2,372,750
_11065
Position (kb)
2370
2371
2372 Strain fitness (log2 ratio)
-1
0
1 at 2369.627 kb on + strand at 2369.627 kb on + strand at 2369.627 kb on + strand at 2369.628 kb on - strand at 2369.629 kb on + strand at 2369.777 kb on + strand, within PS417_11055 at 2370.166 kb on - strand, within PS417_11055 at 2370.282 kb on - strand, within PS417_11055 at 2370.356 kb on - strand, within PS417_11055 at 2370.356 kb on - strand, within PS417_11055 at 2370.559 kb on - strand at 2370.717 kb on - strand at 2371.071 kb on + strand, within PS417_11060 at 2371.115 kb on - strand, within PS417_11060 at 2371.290 kb on + strand, within PS417_11060 at 2371.320 kb on - strand, within PS417_11060 at 2371.320 kb on - strand, within PS417_11060 at 2371.437 kb on + strand, within PS417_11060 at 2371.912 kb on + strand at 2372.052 kb on + strand, within PS417_11065 at 2372.052 kb on + strand, within PS417_11065 at 2372.053 kb on - strand, within PS417_11065 at 2372.134 kb on - strand, within PS417_11065 at 2372.376 kb on + strand, within PS417_11065 at 2372.403 kb on + strand, within PS417_11065 at 2372.409 kb on + strand, within PS417_11065 at 2372.409 kb on + strand, within PS417_11065 at 2372.430 kb on + strand, within PS417_11065 at 2372.523 kb on + strand, within PS417_11065 at 2372.524 kb on - strand, within PS417_11065 at 2372.583 kb on + strand, within PS417_11065 at 2372.748 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Fusaric 120 ug/mL remove 2,369,627 + -0.3 2,369,627 + -1.5 2,369,627 + -0.2 2,369,628 - -0.3 2,369,629 + +0.4 2,369,777 + PS417_11055 0.25 -0.3 2,370,166 - PS417_11055 0.65 +0.7 2,370,282 - PS417_11055 0.77 +0.6 2,370,356 - PS417_11055 0.85 -0.2 2,370,356 - PS417_11055 0.85 +1.1 2,370,559 - +0.2 2,370,717 - +1.1 2,371,071 + PS417_11060 0.38 -0.9 2,371,115 - PS417_11060 0.42 -0.8 2,371,290 + PS417_11060 0.56 -0.5 2,371,320 - PS417_11060 0.59 +0.4 2,371,320 - PS417_11060 0.59 -1.1 2,371,437 + PS417_11060 0.68 -1.1 2,371,912 + -0.6 2,372,052 + PS417_11065 0.16 -0.5 2,372,052 + PS417_11065 0.16 -0.1 2,372,053 - PS417_11065 0.16 +0.1 2,372,134 - PS417_11065 0.26 -0.4 2,372,376 + PS417_11065 0.55 +0.1 2,372,403 + PS417_11065 0.58 +0.2 2,372,409 + PS417_11065 0.59 -0.7 2,372,409 + PS417_11065 0.59 -0.2 2,372,430 + PS417_11065 0.62 -1.6 2,372,523 + PS417_11065 0.73 +1.5 2,372,524 - PS417_11065 0.73 +0.3 2,372,583 + PS417_11065 0.80 +0.1 2,372,748 + -0.1
Or see this region's nucleotide sequence