Strain Fitness in Pseudomonas simiae WCS417 around PS417_09015

Experiment: R2A with Fusaric 120 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_09000 and PS417_09005 are separated by 10 nucleotidesPS417_09005 and PS417_09010 overlap by 4 nucleotidesPS417_09010 and PS417_09015 are separated by 85 nucleotidesPS417_09015 and PS417_09020 are separated by 30 nucleotidesPS417_09020 and PS417_09025 are separated by 97 nucleotides PS417_09000: PS417_09000 - glycerol-3-phosphate dehydrogenase, at 1,961,083 to 1,962,108 _09000 PS417_09005: PS417_09005 - lipase, at 1,962,119 to 1,962,466 _09005 PS417_09010: PS417_09010 - phosphohistidine phosphatase, at 1,962,463 to 1,962,912 _09010 PS417_09015: PS417_09015 - AMP-binding protein, at 1,962,998 to 1,964,647 _09015 PS417_09020: PS417_09020 - esterase, at 1,964,678 to 1,965,121 _09020 PS417_09025: PS417_09025 - alpha/beta hydrolase, at 1,965,219 to 1,966,022 _09025 Position (kb) 1962 1963 1964 1965Strain fitness (log2 ratio) -2 -1 0 1 2at 1962.146 kb on + strandat 1962.147 kb on - strandat 1962.249 kb on - strand, within PS417_09005at 1962.614 kb on - strand, within PS417_09010at 1962.656 kb on + strand, within PS417_09010at 1962.656 kb on + strand, within PS417_09010at 1962.657 kb on - strand, within PS417_09010at 1962.937 kb on + strandat 1962.937 kb on + strandat 1962.937 kb on + strandat 1962.937 kb on + strandat 1962.937 kb on + strandat 1962.938 kb on - strandat 1962.938 kb on - strandat 1962.938 kb on - strandat 1962.938 kb on - strandat 1962.939 kb on + strandat 1962.939 kb on + strandat 1962.940 kb on - strandat 1962.940 kb on - strandat 1962.940 kb on - strandat 1962.940 kb on - strandat 1963.108 kb on + strandat 1963.382 kb on - strand, within PS417_09015at 1963.382 kb on - strand, within PS417_09015at 1963.514 kb on + strand, within PS417_09015at 1963.514 kb on + strand, within PS417_09015at 1963.515 kb on - strand, within PS417_09015at 1963.515 kb on - strand, within PS417_09015at 1963.515 kb on - strand, within PS417_09015at 1963.516 kb on + strand, within PS417_09015at 1963.517 kb on - strand, within PS417_09015at 1963.517 kb on - strand, within PS417_09015at 1963.634 kb on + strand, within PS417_09015at 1964.000 kb on + strand, within PS417_09015at 1964.000 kb on + strand, within PS417_09015at 1964.001 kb on - strand, within PS417_09015at 1964.154 kb on - strand, within PS417_09015at 1964.294 kb on + strand, within PS417_09015at 1964.458 kb on - strand, within PS417_09015at 1964.588 kb on + strandat 1964.588 kb on + strandat 1964.828 kb on + strand, within PS417_09020at 1964.891 kb on + strand, within PS417_09020at 1964.899 kb on + strand, within PS417_09020at 1964.918 kb on + strand, within PS417_09020at 1965.153 kb on + strandat 1965.153 kb on + strandat 1965.154 kb on - strandat 1965.154 kb on - strandat 1965.154 kb on - strandat 1965.154 kb on - strandat 1965.271 kb on - strandat 1965.305 kb on + strand, within PS417_09025at 1965.305 kb on + strand, within PS417_09025at 1965.306 kb on - strand, within PS417_09025at 1965.360 kb on - strand, within PS417_09025at 1965.486 kb on + strand, within PS417_09025at 1965.646 kb on - strand, within PS417_09025at 1965.646 kb on - strand, within PS417_09025

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Fusaric 120 ug/mL
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1,962,146 + -0.3
1,962,147 - -0.0
1,962,249 - PS417_09005 0.37 +0.7
1,962,614 - PS417_09010 0.34 -1.3
1,962,656 + PS417_09010 0.43 +0.0
1,962,656 + PS417_09010 0.43 -0.8
1,962,657 - PS417_09010 0.43 -0.7
1,962,937 + -0.2
1,962,937 + -1.5
1,962,937 + +1.7
1,962,937 + -0.4
1,962,937 + +0.1
1,962,938 - +0.0
1,962,938 - -0.7
1,962,938 - -0.7
1,962,938 - +0.1
1,962,939 + -0.5
1,962,939 + +1.7
1,962,940 - -0.4
1,962,940 - -0.3
1,962,940 - -1.1
1,962,940 - -0.8
1,963,108 + -0.1
1,963,382 - PS417_09015 0.23 +0.1
1,963,382 - PS417_09015 0.23 -0.1
1,963,514 + PS417_09015 0.31 +0.1
1,963,514 + PS417_09015 0.31 +0.9
1,963,515 - PS417_09015 0.31 -0.7
1,963,515 - PS417_09015 0.31 -0.4
1,963,515 - PS417_09015 0.31 +0.8
1,963,516 + PS417_09015 0.31 +1.8
1,963,517 - PS417_09015 0.31 +0.8
1,963,517 - PS417_09015 0.31 +1.6
1,963,634 + PS417_09015 0.39 -0.9
1,964,000 + PS417_09015 0.61 +0.7
1,964,000 + PS417_09015 0.61 +0.9
1,964,001 - PS417_09015 0.61 +1.3
1,964,154 - PS417_09015 0.70 +0.4
1,964,294 + PS417_09015 0.79 +0.4
1,964,458 - PS417_09015 0.88 -0.7
1,964,588 + -0.5
1,964,588 + +0.0
1,964,828 + PS417_09020 0.34 +0.6
1,964,891 + PS417_09020 0.48 +1.1
1,964,899 + PS417_09020 0.50 +2.4
1,964,918 + PS417_09020 0.54 +0.1
1,965,153 + -0.6
1,965,153 + -0.2
1,965,154 - -0.4
1,965,154 - -1.8
1,965,154 - +0.1
1,965,154 - +0.4
1,965,271 - +0.2
1,965,305 + PS417_09025 0.11 -0.1
1,965,305 + PS417_09025 0.11 +0.1
1,965,306 - PS417_09025 0.11 +0.5
1,965,360 - PS417_09025 0.18 +0.3
1,965,486 + PS417_09025 0.33 -0.0
1,965,646 - PS417_09025 0.53 +0.2
1,965,646 - PS417_09025 0.53 +0.1

Or see this region's nucleotide sequence