Strain Fitness in Pseudomonas simiae WCS417 around PS417_23360
Experiment: R2A with Fusaric 120 ug/mL
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
| Position | Strand | Gene | LocusTag | Fraction | R2A with Fusaric 120 ug/mL |
|---|---|---|---|---|---|
| remove | |||||
| 5,056,324 | + | PS417_23355 | 0.69 | +0.1 | |
| 5,056,324 | + | PS417_23355 | 0.69 | -1.7 | |
| 5,056,325 | - | PS417_23355 | 0.69 | -0.5 | |
| 5,056,468 | + | PS417_23355 | 0.81 | +0.5 | |
| 5,056,618 | - | +2.7 | |||
| 5,056,712 | - | -0.3 | |||
| 5,056,776 | - | -2.7 | |||
| 5,057,041 | + | -0.4 | |||
| 5,057,066 | + | +0.1 | |||
| 5,057,067 | - | +0.1 | |||
| 5,057,067 | - | -0.1 | |||
| 5,057,067 | - | -0.7 | |||
| 5,057,283 | - | PS417_23360 | 0.32 | -1.6 | |
| 5,058,161 | - | PS417_23365 | 0.23 | -0.7 | |
| 5,058,411 | + | PS417_23365 | 0.46 | +0.1 | |
| 5,058,411 | + | PS417_23365 | 0.46 | -0.4 | |
| 5,058,412 | - | -0.3 | |||
| 5,058,497 | - | PS417_23365 | 0.54 | +0.4 |
Or see this region's nucleotide sequence